Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305E03f
(509 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15930.1 68417.m02419 dynein light chain, putative similar to... 112 1e-25
At5g20110.1 68418.m02394 dynein light chain, putative similar to... 79 2e-15
At1g23220.1 68414.m02904 dynein light chain type 1 family protei... 74 5e-14
At4g27360.1 68417.m03927 dynein light chain, putative similar to... 71 6e-13
At3g16120.1 68416.m02036 dynein light chain, putative similar to... 70 1e-12
At1g52250.1 68414.m05895 dynein light chain type 1 family protei... 68 4e-12
At5g35370.1 68418.m04204 lectin protein kinase family protein co... 29 1.8
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 29 2.4
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 27 5.5
At1g70390.1 68414.m08097 F-box family protein contains Pfam prof... 27 5.5
At1g62870.1 68414.m07099 expressed protein 27 7.3
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 27 9.7
>At4g15930.1 68417.m02419 dynein light chain, putative similar to
dynein light chain 2 [Mus musculus] GI:15545995;
contains Pfam profile PF01221: Dynein light chain type 1
Length = 103
Score = 112 bits (270), Expect = 1e-25
Identities = 48/62 (77%), Positives = 54/62 (87%)
Frame = +1
Query: 25 ALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 204
A EK+++EKDIA IKKEFDKK+ TWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFK
Sbjct: 42 AFEKYSVEKDIAENIKKEFDKKHGATWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK 101
Query: 205 SG 210
SG
Sbjct: 102 SG 103
>At5g20110.1 68418.m02394 dynein light chain, putative similar to
SP|O02414 Dynein light chain LC6, flagellar outer arm
{Anthocidaris crassispina}; contains Pfam profile
PF01221: Dynein light chain type 1
Length = 209
Score = 78.6 bits (185), Expect = 2e-15
Identities = 36/66 (54%), Positives = 47/66 (71%)
Frame = +1
Query: 10 RHEAQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVA 189
R +LEKF+ K +A +KKEFDK Y P WHCIVG +FGS+VTH T FIYF + ++
Sbjct: 137 RMTLDSLEKFS-SKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHSTGCFIYFSMDKLY 195
Query: 190 ILLFKS 207
+LLFK+
Sbjct: 196 VLLFKT 201
>At1g23220.1 68414.m02904 dynein light chain type 1 family protein
similar to SP|O02414 Dynein light chain LC6, flagellar
outer arm {Anthocidaris crassispina}; contains Pfam
profile PF01221: Dynein light chain type 1
Length = 129
Score = 74.1 bits (174), Expect = 5e-14
Identities = 30/53 (56%), Positives = 39/53 (73%)
Frame = +1
Query: 49 KDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKS 207
K +A +KK+FD Y P WHCIVG +FGSYVTH T F+YF + +V +LLFK+
Sbjct: 69 KRLAHALKKDFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFQIDKVYVLLFKT 121
>At4g27360.1 68417.m03927 dynein light chain, putative similar to
SP|O02414 Dynein light chain LC6, flagellar outer arm
{Anthocidaris crassispina}; contains Pfam profile
PF01221: Dynein light chain type 1
Length = 103
Score = 70.5 bits (165), Expect = 6e-13
Identities = 33/64 (51%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
Frame = +1
Query: 19 AQALEKFNIEK--DIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAI 192
++AL+ F++ + IA FIKKEFD+ Y W CIVG +FGS+VTH + FI+F +G + I
Sbjct: 26 SKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIVGTHFGSFVTHCSGCFIHFSVGSLTI 85
Query: 193 LLFK 204
LLFK
Sbjct: 86 LLFK 89
>At3g16120.1 68416.m02036 dynein light chain, putative similar to
SP|O02414 Dynein light chain LC6, flagellar outer arm
{Anthocidaris crassispina}; contains Pfam profile
PF01221: Dynein light chain type 1
Length = 93
Score = 69.7 bits (163), Expect = 1e-12
Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Frame = +1
Query: 19 AQALEKFNI--EKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAI 192
+Q+L+ F++ IAA IKKEFD++Y W C+VG NFG + TH FIYF+LG +
Sbjct: 26 SQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNFGCFFTHSKGTFIYFHLGTLNF 85
Query: 193 LLFK 204
L+FK
Sbjct: 86 LIFK 89
>At1g52250.1 68414.m05895 dynein light chain type 1 family protein
similar to SP|O02414 Dynein light chain LC6, flagellar
outer arm {Anthocidaris crassispina}; contains Pfam
profile PF01221: Dynein light chain type 1
Length = 94
Score = 67.7 bits (158), Expect = 4e-12
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Frame = +1
Query: 19 AQALEKFNIE--KDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAI 192
+QAL+ F++ K IA IKKEFD++Y W C+VG NFG + TH FIYF L +
Sbjct: 26 SQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVVGSNFGCFFTHSKGTFIYFQLETLKF 85
Query: 193 LLFKSG*T 216
L+FK T
Sbjct: 86 LIFKGAST 93
>At5g35370.1 68418.m04204 lectin protein kinase family protein
contains Pfam domains, PF01453: Lectin (probable mannose
binding) and PF00069: Protein kinase domain
Length = 870
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 209 PLLKSSIATCPR*K*MKWRVSCVTYEPKLRPTMQCQVGLY 90
P L+ + + K ++ + CV EP LRPTM VG++
Sbjct: 762 PRLEGRVTSQEAEKLVRIALCCVHEEPALRPTMAAVVGMF 801
>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
similar to chloroplast membrane protein (ALBINO3)
(GI:3927828) [Arabidopsis thaliana]
Length = 1013
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 385 SECESGCTVFTYTX-YLIRNS-QCWTLTASYLF 477
SEC + T + +T Y RNS +CW +T +Y++
Sbjct: 490 SECSATQTEYKFTSEYGKRNSSECWAMTTTYIY 522
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 413 KTVHPLSH-SLENRSHQH*PCLLLPHSGC*LPMGMYHS 303
KTV+PL ++E S+ H C HSGC L Y S
Sbjct: 111 KTVYPLEKVTMEGESY-HKTCFRCTHSGCPLTHSSYAS 147
>At1g70390.1 68414.m08097 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 332
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = -3
Query: 102 GRIVFLVKFFLDECSYVLF---NVKFLERLSL 16
G +VF+ ++F+DE VL+ N K L R +L
Sbjct: 270 GELVFIARYFVDESPIVLYYNKNTKNLRRFTL 301
>At1g62870.1 68414.m07099 expressed protein
Length = 796
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +1
Query: 34 KFNI--EKDIAAFIKKEFDKKYNPTW 105
KFN+ E+ + +++ F K Y+P W
Sbjct: 545 KFNVVEERQVEKIVERRFKKSYHPAW 570
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -1
Query: 413 KTVHPLSHSLENRSHQH*PCLLLPHSGC*LPMGMY 309
KTV+PL H C HSGC L Y
Sbjct: 112 KTVYPLEKMTMEGESYHKTCFRCAHSGCPLTHSSY 146
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,182,279
Number of Sequences: 28952
Number of extensions: 187588
Number of successful extensions: 441
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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