Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305E02f
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   7.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.6  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              21   7.6  

>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 156 RLRYVSVLTYFNKILTPN 209
           RLRY+   T F + + PN
Sbjct: 374 RLRYIGPPTSFPRFIPPN 391


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 127 PTLCQFANEIGYV 165
           P +C+  N+ GYV
Sbjct: 236 PWICELTNDAGYV 248


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 289 RYRFYIGNYFLCNLSP*QQLYV 354
           +Y  +IG   L +LS  QQ+++
Sbjct: 111 KYSVWIGGSILASLSTFQQMWI 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,456
Number of Sequences: 438
Number of extensions: 2152
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)