Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305E01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   268   4e-73
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   258   3e-70
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   136   1e-33
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...   119   3e-28
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.9  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   3.9  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   9.0  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  268 bits (656), Expect = 4e-73
 Identities = 117/173 (67%), Positives = 142/173 (82%)
 Frame = +3

Query: 3   QIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV 182
           QIGNACWELYCLEHGIQP+G M  +      D  F+TFFSETG GK+VPR+++VDLEP V
Sbjct: 15  QIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVPRSIYVDLEPNV 74

Query: 183 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQG 362
           +D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D+IR++AD C+GLQG
Sbjct: 75  IDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQG 134

Query: 363 FLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNS 521
           FL+FH            LL+ERL+++Y KKSKL+F++YPAPQVST+VVEPYNS
Sbjct: 135 FLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNS 187


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  258 bits (633), Expect = 3e-70
 Identities = 116/178 (65%), Positives = 143/178 (80%), Gaps = 5/178 (2%)
 Frame = +3

Query: 3   QIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSETGAGKHVPRAVFVD 167
           QIGNACWELYCLEHGI PDG  PT+     K     +D F TFFSETG GK VPR+++VD
Sbjct: 15  QIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSETGQGKFVPRSIYVD 73

Query: 168 LEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQC 347
           LEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++D VL+RIR++AD C
Sbjct: 74  LEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNC 133

Query: 348 TGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNS 521
           +GLQGFL+FH            LL+ERL+++YGKKS L+F++YPAPQVST+VVEPYNS
Sbjct: 134 SGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNS 191


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  136 bits (330), Expect = 1e-33
 Identities = 67/173 (38%), Positives = 96/173 (55%)
 Frame = +3

Query: 3   QIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV 182
           Q+G A W     EHG+   G      T     +  N +F+E   GK+VPRAV VDLEP  
Sbjct: 15  QVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGKYVPRAVLVDLEPGT 72

Query: 183 VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQG 362
           +D V++G +  LF P+ +I G+  A N +A+GHYT G E+ D VLD +R+ A+ C  LQG
Sbjct: 73  MDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQG 132

Query: 363 FLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNS 521
           F + H            LL+ ++  +Y  +    F++ PAP+ S  VVEPYN+
Sbjct: 133 FQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNA 185


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score =  119 bits (286), Expect = 3e-28
 Identities = 65/176 (36%), Positives = 100/176 (56%), Gaps = 3/176 (1%)
 Frame = +3

Query: 3   QIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV 182
           QIG+  W+  CLEHGI PDG + +  T   G D  + FF ++   +++PRA+ +DLEP V
Sbjct: 16  QIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRYIPRAILIDLEPRV 73

Query: 183 VDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGL 356
           V+ + + TY  L++PE ++  K    A NN+A G Y+  + I + ++D I + AD    L
Sbjct: 74  VNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDREADGSDSL 132

Query: 357 QGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ-VSTAVVEPYNS 521
           +GF + H             L+ERL+  Y KK    ++++P  Q VS  VV+PYNS
Sbjct: 133 EGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNS 188


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 40  STASSLMARCPQTRPSGVETILSTLSSARPELAST 144
           ST SSL +    ++PS   T  ST SSA P   S+
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS 207


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +2

Query: 59  WPDAHRQDHRGWRRFFQHFLQR 124
           W  A R D R  R  FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 246 KEDAANNYARGHYTIGKEIVDLV 314
           +E  ANN+ RGH  I K+  D +
Sbjct: 599 RERKANNFFRGHIEIDKKTKDFL 621


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,181,530
Number of Sequences: 5004
Number of extensions: 43994
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)