Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305D11f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)                    29   1.8  
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)                    29   2.3  
SB_9094| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_23840| Best HMM Match : Casein (HMM E-Value=2.8)                    28   5.4  
SB_57597| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_46261| Best HMM Match : Integrase_Zn (HMM E-Value=5.9)              27   7.1  
SB_27810| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_51745| Best HMM Match : DPRP (HMM E-Value=0.33)                     27   9.4  
SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07)                   27   9.4  
SB_41090| Best HMM Match : Integrase_Zn (HMM E-Value=8.1)              27   9.4  
SB_29980| Best HMM Match : E-MAP-115 (HMM E-Value=1.3)                 27   9.4  
SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_24095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)
          Length = 283

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 53  GFEENLMRNWVCLVEHESSRDTSKTN 130
           GFEE + R W+   + E S D +KTN
Sbjct: 33  GFEEEVKRQWIGCDKLEGSNDITKTN 58


>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
          Length = 334

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 46  ETWLRRKSHEELGMSGRAREQP*HVQDEHEP 138
           E WL RK H E  +S   RE+   V+++H+P
Sbjct: 223 EAWLERKEHREDSLSEHEREE---VKNKHKP 250


>SB_9094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 510

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/78 (28%), Positives = 35/78 (44%)
 Frame = +2

Query: 50  HGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGASPGKDCNVK 229
           H  +   +++W+  +  E  RDT+      N      + ++N+  W  K     K  +VK
Sbjct: 53  HEADPVAVKSWLKKLSEEQFRDTADKYLRPNNCSHVVVPKVNEEIW-GKLTRQVKTKDVK 111

Query: 230 CSDLLTDDITKAAKCAKK 283
            S L T +ITKA   A K
Sbjct: 112 FSRLQT-NITKAGHIAVK 128


>SB_23840| Best HMM Match : Casein (HMM E-Value=2.8)
          Length = 501

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 92  VEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGASPGKDCNVKCSDLLTDDI 256
           V H+ S++ S+TN  RNG        +  +    K +   +DC V   DL T ++
Sbjct: 342 VTHKPSKERSRTNRARNGHAQTERETVTHKP-SEKRSRTNRDCGVGRDDLTTIEL 395


>SB_57597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = -2

Query: 343 GALAVVLPTVPGIEAVTFVNFLSAFRCLSNVVSQEVGALNVAVFAWTGAFAAPVPVVDLE 164
           G   V +  VP +   T    +S     +NV+  E    N+    W G+   P P+  L 
Sbjct: 147 GVTPVYMYAVPSVSVSTVSTVMSDME--TNVLYMEYNPQNLIFRDWLGSLVIPTPLDSLS 204

Query: 163 Q 161
           Q
Sbjct: 205 Q 205


>SB_46261| Best HMM Match : Integrase_Zn (HMM E-Value=5.9)
          Length = 168

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = +2

Query: 137 RNGSKDYGLFQINDRYWCSKGASPGKDCNVKC 232
           R+   ++ +  + +R+W  +G +  K+C +KC
Sbjct: 46  RHVGVEHVINHLRERFWILRGRTEVKECTIKC 77


>SB_27810| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 35  HELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSK 151
           H  RKH F  N+ R+ +    HE+ ++  K +  R  +K
Sbjct: 61  HRRRKHIFRHNVRRSGISGESHENRKNKKKEHKKRMHAK 99


>SB_51745| Best HMM Match : DPRP (HMM E-Value=0.33)
          Length = 352

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 170 INDRYWCSKGASPGKDCNVKC 232
           + +R+W  +G +  K+C +KC
Sbjct: 278 LRERFWILRGRAEVKECTIKC 298


>SB_43663| Best HMM Match : F-box (HMM E-Value=4e-07)
          Length = 717

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 23  CGLVHELRKHGFEENLMRNWVCLVEHESSRDTSKTNT 133
           CG  H L  H  EE  +R + CL   + S   S +N+
Sbjct: 596 CGYGHALTDHVLEEMAVRKYACLEIMDVSYSNSISNS 632


>SB_41090| Best HMM Match : Integrase_Zn (HMM E-Value=8.1)
          Length = 166

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 170 INDRYWCSKGASPGKDCNVKC 232
           + +R+W  +G +  K+C +KC
Sbjct: 57  LRERFWILRGRAEVKECTIKC 77


>SB_29980| Best HMM Match : E-MAP-115 (HMM E-Value=1.3)
          Length = 215

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 46  ETWLRRKSHEELGMSGRAREQP*HVQDEHEP*RLEGLR 159
           E W+RRK  E L    RAR +     +E    R E LR
Sbjct: 162 EEWMRRKDQEALEREERARREAEQKYEEKRKRREEVLR 199


>SB_40159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1497

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 170  INDRYWCSKGASPGKDCNVKC 232
            + +R+W  +G +  K+C +KC
Sbjct: 1202 LRERFWILRGRAEVKECTIKC 1222


>SB_24095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 170  INDRYWCSKGASPGKDCNVKC 232
            + +R+W  +G +  K+C +KC
Sbjct: 959  LRERFWILRGRAEVKECTIKC 979


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,159,685
Number of Sequences: 59808
Number of extensions: 264771
Number of successful extensions: 607
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)