Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305D10f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 27 1.7
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 27 1.7
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 27 1.7
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 26 3.0
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ... 25 5.2
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 25 5.2
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 25 6.8
SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.0
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 9.0
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Frame = +2
Query: 212 QKQLGDMEGEVKEIQMEIAAIKRD------RLDVMTKKQMNVFTPESEYLESTDSGFGES 373
Q ++ M+GE+ E+++E+ +KR+ R+D++ +K F + S D F S
Sbjct: 141 QNEMTSMKGEMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRF-NS 199
Query: 374 VNKASEERSCNLTQITKLREEL 439
+++ + L + + E +
Sbjct: 200 IDRRFDSMEQRLDSMDQKMETI 221
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Frame = +2
Query: 212 QKQLGDMEGEVKEIQMEIAAIKRD------RLDVMTKKQMNVFTPESEYLESTDSGFGES 373
Q ++ M+GE+ E+++E+ +KR+ R+D++ +K F + S D F S
Sbjct: 141 QNEMTSMKGEMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRF-NS 199
Query: 374 VNKASEERSCNLTQITKLREEL 439
+++ + L + + E +
Sbjct: 200 IDRRFDSMEQRLDSMDQKMETI 221
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 27.1 bits (57), Expect = 1.7
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -2
Query: 271 SGYFHLDFFYFAFHIPQLF 215
S +F+L++ FA+++PQ F
Sbjct: 365 SSFFYLNYMLFAYYVPQYF 383
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 200 INQKQKQLGDMEGEVKEIQMEIAAIKR 280
+ +K K LG+M E+ E+Q +IA R
Sbjct: 34 LEEKSKYLGEMTRELNEVQDQIAPYDR 60
>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 246
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 242 VKEIQMEIAAIKRDRLDVMTKKQMNVFTPESEYLESTDSGFGESVNKASEER 397
+ ++Q+EI I D + +VFTP EY+ ++ G E K +R
Sbjct: 107 IDKLQLEIPVIGLHMSDEKLLEPPDVFTP--EYISISEEGVNEFNEKVGLDR 156
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 5.2
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = -3
Query: 420 VICVK--LQDLSSDALFTDSPKPLSVLSRYSDSGVKTFICFFVITSNRSRFIAAISIWIS 247
++CV+ L SD SPK +S L S + + F ITS SR + S S
Sbjct: 95 IVCVRGVRLPLKSDIEAVKSPKAISHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDATS 154
Query: 246 FTSP 235
+P
Sbjct: 155 ANNP 158
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 224 GDMEGEVKEIQMEIAAIKRDRLDVMTKKQMNVFTPESEY 340
G EGE E + ++AA++RD +V + M V E EY
Sbjct: 412 GMEEGEFSEAREDLAALERDYEEV-GQDSMEVDYMEEEY 449
>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -1
Query: 263 FPSGFLLLRLPYP 225
F SGF+LL+LP+P
Sbjct: 136 FFSGFILLKLPFP 148
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 311 MNVFTPESEYLESTDSGFGESVNKASEERSCNLTQITKLRE 433
+N+ T ES LESTDS ++ A + + + KL E
Sbjct: 281 LNLSTAESHDLESTDSELWSEISDAGPDTN-TINTAAKLSE 320
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,820,138
Number of Sequences: 5004
Number of extensions: 34114
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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