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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305D10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    27   1.7  
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||...    27   1.7  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    27   1.7  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    26   3.0  
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ...    25   5.2  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    25   5.2  
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    25   6.8  
SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.0  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   9.0  

>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
 Frame = +2

Query: 212 QKQLGDMEGEVKEIQMEIAAIKRD------RLDVMTKKQMNVFTPESEYLESTDSGFGES 373
           Q ++  M+GE+ E+++E+  +KR+      R+D++ +K    F    +   S D  F  S
Sbjct: 141 QNEMTSMKGEMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRF-NS 199

Query: 374 VNKASEERSCNLTQITKLREEL 439
           +++  +     L  + +  E +
Sbjct: 200 IDRRFDSMEQRLDSMDQKMETI 221


>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
 Frame = +2

Query: 212 QKQLGDMEGEVKEIQMEIAAIKRD------RLDVMTKKQMNVFTPESEYLESTDSGFGES 373
           Q ++  M+GE+ E+++E+  +KR+      R+D++ +K    F    +   S D  F  S
Sbjct: 141 QNEMTSMKGEMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRF-NS 199

Query: 374 VNKASEERSCNLTQITKLREEL 439
           +++  +     L  + +  E +
Sbjct: 200 IDRRFDSMEQRLDSMDQKMETI 221


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -2

Query: 271 SGYFHLDFFYFAFHIPQLF 215
           S +F+L++  FA+++PQ F
Sbjct: 365 SSFFYLNYMLFAYYVPQYF 383


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 200 INQKQKQLGDMEGEVKEIQMEIAAIKR 280
           + +K K LG+M  E+ E+Q +IA   R
Sbjct: 34  LEEKSKYLGEMTRELNEVQDQIAPYDR 60


>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 246

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 242 VKEIQMEIAAIKRDRLDVMTKKQMNVFTPESEYLESTDSGFGESVNKASEER 397
           + ++Q+EI  I     D    +  +VFTP  EY+  ++ G  E   K   +R
Sbjct: 107 IDKLQLEIPVIGLHMSDEKLLEPPDVFTP--EYISISEEGVNEFNEKVGLDR 156


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = -3

Query: 420 VICVK--LQDLSSDALFTDSPKPLSVLSRYSDSGVKTFICFFVITSNRSRFIAAISIWIS 247
           ++CV+     L SD     SPK +S L     S  +  +  F ITS  SR +   S   S
Sbjct: 95  IVCVRGVRLPLKSDIEAVKSPKAISHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDATS 154

Query: 246 FTSP 235
             +P
Sbjct: 155 ANNP 158


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 224 GDMEGEVKEIQMEIAAIKRDRLDVMTKKQMNVFTPESEY 340
           G  EGE  E + ++AA++RD  +V  +  M V   E EY
Sbjct: 412 GMEEGEFSEAREDLAALERDYEEV-GQDSMEVDYMEEEY 449


>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1

Query: 263 FPSGFLLLRLPYP 225
           F SGF+LL+LP+P
Sbjct: 136 FFSGFILLKLPFP 148


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 311 MNVFTPESEYLESTDSGFGESVNKASEERSCNLTQITKLRE 433
           +N+ T ES  LESTDS     ++ A  + +  +    KL E
Sbjct: 281 LNLSTAESHDLESTDSELWSEISDAGPDTN-TINTAAKLSE 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,820,138
Number of Sequences: 5004
Number of extensions: 34114
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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