BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS305D10f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 27 1.7 SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 27 1.7 SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 27 1.7 SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 26 3.0 SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ... 25 5.2 SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 25 5.2 SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 25 6.8 SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.0 SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 9.0 >SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pombe|chr 3|||Manual Length = 323 Score = 27.1 bits (57), Expect = 1.7 Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 6/82 (7%) Frame = +2 Query: 212 QKQLGDMEGEVKEIQMEIAAIKRD------RLDVMTKKQMNVFTPESEYLESTDSGFGES 373 Q ++ M+GE+ E+++E+ +KR+ R+D++ +K F + S D F S Sbjct: 141 QNEMTSMKGEMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRF-NS 199 Query: 374 VNKASEERSCNLTQITKLREEL 439 +++ + L + + E + Sbjct: 200 IDRRFDSMEQRLDSMDQKMETI 221 >SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||Manual Length = 247 Score = 27.1 bits (57), Expect = 1.7 Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 6/82 (7%) Frame = +2 Query: 212 QKQLGDMEGEVKEIQMEIAAIKRD------RLDVMTKKQMNVFTPESEYLESTDSGFGES 373 Q ++ M+GE+ E+++E+ +KR+ R+D++ +K F + S D F S Sbjct: 141 QNEMTSMKGEMAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRF-NS 199 Query: 374 VNKASEERSCNLTQITKLREEL 439 +++ + L + + E + Sbjct: 200 IDRRFDSMEQRLDSMDQKMETI 221 >SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr 2|||Manual Length = 599 Score = 27.1 bits (57), Expect = 1.7 Identities = 8/19 (42%), Positives = 15/19 (78%) Frame = -2 Query: 271 SGYFHLDFFYFAFHIPQLF 215 S +F+L++ FA+++PQ F Sbjct: 365 SSFFYLNYMLFAYYVPQYF 383 >SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosaccharomyces pombe|chr 1|||Manual Length = 259 Score = 26.2 bits (55), Expect = 3.0 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +2 Query: 200 INQKQKQLGDMEGEVKEIQMEIAAIKR 280 + +K K LG+M E+ E+Q +IA R Sbjct: 34 LEEKSKYLGEMTRELNEVQDQIAPYDR 60 >SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces pombe|chr 1|||Manual Length = 246 Score = 25.4 bits (53), Expect = 5.2 Identities = 15/52 (28%), Positives = 25/52 (48%) Frame = +2 Query: 242 VKEIQMEIAAIKRDRLDVMTKKQMNVFTPESEYLESTDSGFGESVNKASEER 397 + ++Q+EI I D + +VFTP EY+ ++ G E K +R Sbjct: 107 IDKLQLEIPVIGLHMSDEKLLEPPDVFTP--EYISISEEGVNEFNEKVGLDR 156 >SPBC25H2.15 |||programmed cell death protein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 396 Score = 25.4 bits (53), Expect = 5.2 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Frame = -3 Query: 420 VICVK--LQDLSSDALFTDSPKPLSVLSRYSDSGVKTFICFFVITSNRSRFIAAISIWIS 247 ++CV+ L SD SPK +S L S + + F ITS SR + S S Sbjct: 95 IVCVRGVRLPLKSDIEAVKSPKAISHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDATS 154 Query: 246 FTSP 235 +P Sbjct: 155 ANNP 158 >SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosaccharomyces pombe|chr 2|||Manual Length = 449 Score = 25.0 bits (52), Expect = 6.8 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +2 Query: 224 GDMEGEVKEIQMEIAAIKRDRLDVMTKKQMNVFTPESEY 340 G EGE E + ++AA++RD +V + M V E EY Sbjct: 412 GMEEGEFSEAREDLAALERDYEEV-GQDSMEVDYMEEEY 449 >SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 258 Score = 24.6 bits (51), Expect = 9.0 Identities = 9/13 (69%), Positives = 12/13 (92%) Frame = -1 Query: 263 FPSGFLLLRLPYP 225 F SGF+LL+LP+P Sbjct: 136 FFSGFILLKLPFP 148 >SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosaccharomyces pombe|chr 2|||Manual Length = 1630 Score = 24.6 bits (51), Expect = 9.0 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = +2 Query: 311 MNVFTPESEYLESTDSGFGESVNKASEERSCNLTQITKLRE 433 +N+ T ES LESTDS ++ A + + + KL E Sbjct: 281 LNLSTAESHDLESTDSELWSEISDAGPDTN-TINTAAKLSE 320 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,820,138 Number of Sequences: 5004 Number of extensions: 34114 Number of successful extensions: 118 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 116 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 118 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -