Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305D10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0611 - 4567839-4568144,4568280-4569209,4569301-4569566,456... 31 0.42
02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,176... 31 0.42
04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036 31 0.56
09_02_0414 - 8825575-8826654,8826737-8827144 30 0.98
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 30 1.3
09_06_0107 + 20907560-20908491,20908511-20908625,20908967-209090... 29 3.0
05_03_0338 + 12652966-12653017,12653813-12653860,12653924-126540... 28 5.2
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 27 9.1
03_02_0902 + 12278770-12281448 27 9.1
02_05_0908 + 32668706-32669140,32669772-32669957,32670316-326704... 27 9.1
>02_01_0611 -
4567839-4568144,4568280-4569209,4569301-4569566,
4569662-4569970,4570497-4570647,4570958-4571012,
4571137-4571512,4571560-4571797,4571878-4572096,
4572629-4572910
Length = 1043
Score = 31.5 bits (68), Expect = 0.42
Identities = 22/91 (24%), Positives = 44/91 (48%)
Frame = +2
Query: 173 EAARPVTININQKQKQLGDMEGEVKEIQMEIAAIKRDRLDVMTKKQMNVFTPESEYLEST 352
EAA + + I K +L +++ E+ ++ME ++K D D +K++++ + E L+
Sbjct: 550 EAAAKLKMEITSKPIELDEVDREIIRLEMEKLSLKND-TDKASKQRLSKLEADLESLKQK 608
Query: 353 DSGFGESVNKASEERSCNLTQITKLREELIR 445
E E +T+I ++EE R
Sbjct: 609 QKNLSEH----WEYEKSLMTRIRSIKEETDR 635
>02_01_0267 -
1766071-1766261,1766368-1766569,1766719-1766814,
1767414-1767560,1767635-1767800,1767907-1767973,
1772850-1772949,1773029-1773099,1773199-1773382,
1773784-1773929,1774484-1774663,1774737-1774824,
1775634-1775838,1775945-1776081,1776529-1776612,
1776718-1776894,1777050-1777194,1777642-1777763,
1777846-1778091,1778571-1778789,1779016-1779094,
1779178-1779257,1779291-1779320
Length = 1053
Score = 31.5 bits (68), Expect = 0.42
Identities = 24/82 (29%), Positives = 37/82 (45%)
Frame = +2
Query: 191 TININQKQKQLGDMEGEVKEIQMEIAAIKRDRLDVMTKKQMNVFTPESEYLESTDSGFGE 370
T IN+ + Q D+E + E+ +A I+ D D+ + +N + E + S E
Sbjct: 173 TKGINENKAQKEDVEKKCTEVLKVVAQIELDLRDI-KDRILNEKLAKDEAARDSQSVRME 231
Query: 371 SVNKASEERSCNLTQITKLREE 436
S SE + TKLREE
Sbjct: 232 SERSKSELAETSKVHQTKLREE 253
>04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036
Length = 762
Score = 31.1 bits (67), Expect = 0.56
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Frame = +2
Query: 203 NQKQKQLGDMEGEVKEIQMEIAAIKRDRL---DVMTKKQMNVFTPESEYLESTDSGF--G 367
N +++ ++EG V+++++EIA +K+ R +++ K + E E+ S G
Sbjct: 293 NVAEQRAVELEGVVEQLEVEIADVKKARARSEELLGKWKTKALELEVRLEEADQSNILKG 352
Query: 368 ESVNKASEERSCNLTQITKLREEL 439
ES+ A +E +T + + E+
Sbjct: 353 ESLESAMKELDAKMTLLQEKESEI 376
>09_02_0414 - 8825575-8826654,8826737-8827144
Length = 495
Score = 30.3 bits (65), Expect = 0.98
Identities = 18/67 (26%), Positives = 39/67 (58%)
Frame = +2
Query: 200 INQKQKQLGDMEGEVKEIQMEIAAIKRDRLDVMTKKQMNVFTPESEYLESTDSGFGESVN 379
+N ++++ +++ + + Q+E+A IK+D +V KK+ ++ +E L + S F E
Sbjct: 418 LNNDREKMSEVQLRLSKEQLELARIKQDEANV--KKETALYMKYTELLLADTSRFDE-FQ 474
Query: 380 KASEERS 400
KA E++
Sbjct: 475 KAEYEKA 481
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -2
Query: 262 FHLDFFYFAFHIPQLFLLLIDVNGHGSSCFDATDSDED 149
FH ++ Y H QL L +V GH SS D++DSD++
Sbjct: 121 FHEEYEYLHKHYQQLIGKLENV-GHSSSDSDSSDSDDE 157
>09_06_0107 +
20907560-20908491,20908511-20908625,20908967-20909058,
20909293-20909556,20910714-20911494
Length = 727
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 226 GYGRRSKRNPDGNSRYKT*PIRCDDEETDECFYAGIGIS 342
GYG S+++P + R K +RC +E + IG++
Sbjct: 639 GYGDMSRKSPVSDKRAKVEALRCRADEEKSKYEKSIGVT 677
>05_03_0338 +
12652966-12653017,12653813-12653860,12653924-12654080,
12654104-12654206,12654866-12655111,12655802-12656204,
12656257-12656354,12656460-12657044,12657120-12657566
Length = 712
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +2
Query: 194 ININQKQKQLGDMEGEVKEIQMEIAAIKRDRLDVMTKK 307
+ I + + D+E E+ E++ME+A +K+D D+ T K
Sbjct: 79 LQIRGSVRSMVDIE-EMNEVRMELAGMKKDIADLKTLK 115
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +2
Query: 200 INQKQKQLGDMEGEVKEI-QMEIAAIKRDRLDVMTKKQ--MNVF 322
I + Q+ G++EGEVKE+ + E+ KR +M KQ MN F
Sbjct: 381 IREVQEIEGEIEGEVKELEEEEVTLFKRLTDGLMEVKQDLMNFF 424
>03_02_0902 + 12278770-12281448
Length = 892
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = -3
Query: 393 SSDALFTDS-PKP-LSVLSRYSDSGVKTFICFFVITSNRSRFIAAISIWISFTSPSISPN 220
++DALF+ S P P +++LS +S + F + S + A ++ ++FT PN
Sbjct: 131 AADALFSVSIPDPNITLLSNFSAYQTALALNFDYLVREFSVNVTASTLDLTFTPEKGHPN 190
Query: 219 CFCF 208
F F
Sbjct: 191 AFAF 194
>02_05_0908 +
32668706-32669140,32669772-32669957,32670316-32670414,
32671010-32671147,32672276-32672533,32675009-32675272,
32675426-32675571,32675762-32675839,32676746-32676875,
32677040-32677286,32677374-32677423,32677767-32677869,
32678332-32678354
Length = 718
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 286 SVTFYSGYFHLDFFYFAFHIPQLFLLLI 203
+V + GYF LDFF +PQ+ +LL+
Sbjct: 266 AVRYLRGYFLLDFF-VVLPLPQVMILLV 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,937,043
Number of Sequences: 37544
Number of extensions: 201294
Number of successful extensions: 504
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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