Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305D10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.4  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   1.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   3.3  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   4.4  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   4.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   7.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   7.7  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 148 TMKLTLEAHSSPLIWPQRL 92
           T K+TL  + S + WP RL
Sbjct: 383 TEKMTLSVNESNITWPGRL 401


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 17/79 (21%), Positives = 35/79 (44%)
 Frame = +2

Query: 206 QKQKQLGDMEGEVKEIQMEIAAIKRDRLDVMTKKQMNVFTPESEYLESTDSGFGESVNKA 385
           +K +Q   +  E +++  E  +  R R     +++ N +  E EY +  ++    S ++ 
Sbjct: 14  KKDRQYEKLHNEKEKLLEERTS--RKRYSRSREREQNSYKNEKEYRKYRETSKERSRDRT 71

Query: 386 SEERSCNLTQITKLREELI 442
             ERS     I+ L  + I
Sbjct: 72  ERERSREPKIISSLSNKTI 90


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 89  YETLRPNKR*GVSFKCKFHRVLVAIGSIE 175
           Y+ +RP K+ G +    FH  ++ + SI+
Sbjct: 48  YDKMRPPKKDGQATVVYFHVTVMGLDSID 76


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 17/79 (21%), Positives = 33/79 (41%)
 Frame = +2

Query: 206 QKQKQLGDMEGEVKEIQMEIAAIKRDRLDVMTKKQMNVFTPESEYLESTDSGFGESVNKA 385
           +K ++   +  E +++  E  +  R R     +++ N +  E EY +  +     S +K 
Sbjct: 14  EKDRRYEKLHNEKEKLLEERTS--RKRYSRSREREQNSYKNEKEYRKYRERSKERSRDKR 71

Query: 386 SEERSCNLTQITKLREELI 442
             ERS     I+ L    I
Sbjct: 72  ERERSKERKIISSLSNNYI 90


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 17/79 (21%), Positives = 33/79 (41%)
 Frame = +2

Query: 206 QKQKQLGDMEGEVKEIQMEIAAIKRDRLDVMTKKQMNVFTPESEYLESTDSGFGESVNKA 385
           +K ++   +  E +++  E  +  R R     +++ N +  E EY +  +     S +K 
Sbjct: 14  EKDRRYEKLHNEKEKLLEERTS--RKRYSRSREREQNSYKNEKEYRKYRERSKERSRDKR 71

Query: 386 SEERSCNLTQITKLREELI 442
             ERS     I+ L    I
Sbjct: 72  ERERSKERKIISSLSNNYI 90


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/27 (22%), Positives = 16/27 (59%)
 Frame = -1

Query: 407 NYKTSLPMLYLQIHQSHCLYFQDIPIP 327
           NY  +    Y ++++++ +  + IP+P
Sbjct: 104 NYNNNYNNNYKKLYKNYIINIEQIPVP 130


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/27 (22%), Positives = 16/27 (59%)
 Frame = -1

Query: 407 NYKTSLPMLYLQIHQSHCLYFQDIPIP 327
           NY  +    Y ++++++ +  + IP+P
Sbjct: 104 NYNNNYNNNYKKLYKNYIINIEQIPVP 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,409
Number of Sequences: 438
Number of extensions: 2257
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)