Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305D10f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 33 0.12
At5g23980.1 68418.m02818 ferric-chelate reductase, putative simi... 29 1.9
At5g23990.1 68418.m02819 ferric-chelate reductase, putative simi... 29 2.5
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1... 28 3.3
At5g50160.1 68418.m06212 ferric reductase-like transmembrane com... 28 4.4
At1g67230.1 68414.m07652 expressed protein 28 4.4
At2g23300.1 68415.m02781 leucine-rich repeat transmembrane prote... 27 5.8
At2g22900.1 68415.m02718 galactosyl transferase GMA12/MNN10 fami... 27 5.8
At1g55170.1 68414.m06301 expressed protein 27 5.8
At5g03670.1 68418.m00326 expressed protein 27 7.7
At3g52190.1 68416.m05731 transducin family protein / WD-40 repea... 27 7.7
At3g06540.1 68416.m00758 GDP dissociation inhibitor family prote... 27 7.7
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 33.1 bits (72), Expect = 0.12
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Frame = +2
Query: 167 SIEAARPVTININQKQKQLGDMEGEVKEIQMEIAAIKRDRLDVMTKK---QMNVFTPESE 337
S + +T I+ + +L M + +E++ ++ K + V K+ ++N +
Sbjct: 824 SSSSIETLTAEIDGLRAELDSMSVQKEEVEKQMVC-KSEEASVKIKRLDDEVNGLRQQVA 882
Query: 338 YLESTDSGFGESVNKASEERSCNLTQITKLREELI 442
L+S + + K SEE S L+QIT L+EE+I
Sbjct: 883 SLDSQRAELEIQLEKKSEEISEYLSQITNLKEEII 917
>At5g23980.1 68418.m02818 ferric-chelate reductase, putative similar
to ferric-chelate reductase (FRO1) [Pisum sativum]
GI:15341529; contains Pfam profile PF01794: Ferric
reductase like transmembrane component
Length = 699
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -2
Query: 331 FRRKNIHLFL-RHHI*SVTFYSGYFHLDFFYFAFHIPQLFLLLID 200
FRRK +F HH+ + H+ +F +P +FL ID
Sbjct: 254 FRRKKFEIFFYTHHLYGLYIVFYVIHVGDSWFCMILPNIFLFFID 298
>At5g23990.1 68418.m02819 ferric-chelate reductase, putative similar
to ferric-chelate reductase (FRO1) [Pisum sativum]
GI:15341529; contains Pfam profile PF01794: Ferric
reductase like transmembrane component
Length = 657
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -2
Query: 331 FRRKNIHLFL-RHHI*SVTFYSGYFHLDFFYFAFHIPQLFLLLID 200
FRRK +F HH+ + H+ +F +P +FL ID
Sbjct: 212 FRRKKFEIFFYTHHLYGLYIVFYAIHVGDSWFCMILPNIFLFFID 256
>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 968
Score = 28.3 bits (60), Expect = 3.3
Identities = 21/91 (23%), Positives = 46/91 (50%)
Frame = +2
Query: 173 EAARPVTININQKQKQLGDMEGEVKEIQMEIAAIKRDRLDVMTKKQMNVFTPESEYLEST 352
EAA + + I K L +++ V +++ME ++ D D +++++N E L+
Sbjct: 472 EAAAKLKMEITSKPTALDELDRSVIKLEMERLSLTND-TDKASRERLNRIETELVLLKEK 530
Query: 353 DSGFGESVNKASEERSCNLTQITKLREELIR 445
+ E + ERS ++++ ++EE+ R
Sbjct: 531 QA---ELTEQWEHERSV-MSRLQSIKEEIDR 557
>At5g50160.1 68418.m06212 ferric reductase-like transmembrane
component family protein contains Pfam profile PF01794:
Ferric reductase like transmembrane component
Length = 728
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 334 RFRRKNIHLFL-RHHI*SVTFYSGYFHLDFFYFAFHIPQLFLLLID 200
+ RRKN +F HH+ V + FH +F + +P +FL +D
Sbjct: 257 QIRRKNFEVFYYTHHLYIVFLVAFLFHAGDRHFYWVLPGMFLFGLD 302
>At1g67230.1 68414.m07652 expressed protein
Length = 1132
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/85 (21%), Positives = 39/85 (45%)
Frame = +2
Query: 182 RPVTININQKQKQLGDMEGEVKEIQMEIAAIKRDRLDVMTKKQMNVFTPESEYLESTDSG 361
R V + + ++ D+E + KE++ ++++R+R + +++ + T + D
Sbjct: 177 RAVDAKLAEVSRKSSDVERKAKEVEARESSLQRERFSYIAEREADEATLSK---QREDLR 233
Query: 362 FGESVNKASEERSCNLTQITKLREE 436
E + EER I K RE+
Sbjct: 234 EWERKLQEGEERVAKSQMIVKQRED 258
>At2g23300.1 68415.m02781 leucine-rich repeat transmembrane protein
kinase, putative
Length = 773
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 271 SGYFHLDFFYFAFHIPQLFLLLIDVNGHG 185
S +F + FF+F F LFLL +N G
Sbjct: 7 SPFFFVSFFFFFFFFSSLFLLSSALNSDG 35
>At2g22900.1 68415.m02718 galactosyl transferase GMA12/MNN10 family
protein very low similarity to
alpha-1,2-galactosyltransferase, Schizosaccharomyces
pombe [SP|Q09174]
Length = 449
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 354 SVLSRYSDSGVKTFICFF-VITSNRSRFIAAISIWISFTSPSISPN 220
S +++Y+ + + +C V+ F++ I +W F+ SISPN
Sbjct: 14 SPMAKYAGTRTRPVVCISDVVLFLGGAFMSLILVWSFFSFSSISPN 59
>At1g55170.1 68414.m06301 expressed protein
Length = 283
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/77 (22%), Positives = 33/77 (42%)
Frame = +2
Query: 164 GSIEAARPVTININQKQKQLGDMEGEVKEIQMEIAAIKRDRLDVMTKKQMNVFTPESEYL 343
G+++ R + KQ+ M EVK++Q E+ RD ++ K++ + + + +
Sbjct: 148 GNVQLLRKDLAKLQSDNKQIPGMRAEVKDLQKELMH-ARDAIEYEKKEKFELM-EQRQTM 205
Query: 344 ESTDSGFGESVNKASEE 394
E V K E
Sbjct: 206 EKNMVSMAREVEKLRAE 222
>At5g03670.1 68418.m00326 expressed protein
Length = 516
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 438 NSSRSFVICVKLQDLSSDALFTDSPKPLSVLSRYSDSGVKT 316
N S F + + QDLS D F +SP + + S+ G +T
Sbjct: 235 NGSDEFAMMMNGQDLSEDKRFCESPFHFVLQTMPSNGGFRT 275
>At3g52190.1 68416.m05731 transducin family protein / WD-40 repeat
family protein similar to St12p protein (GI:166878)
{Arabidopsis thaliana}; contains Pfam profile: PF00400
WD domain, G-beta repeat
Length = 398
Score = 27.1 bits (57), Expect = 7.7
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = +2
Query: 167 SIEAARPVTININQKQKQLGDMEGEVKEIQMEIAAIKR--DRLDVMTKKQMNVFTPESEY 340
S + A + ++++ K LG +G+V +++ I RL + F P
Sbjct: 253 SRKTASTMAVSLDGKYIALGGKDGDVSVAEVKTMEIYHYSKRLHLGQSIASLEFCPSERV 312
Query: 341 LESTDSGFGESVNKASEERSCNLTQITKLREELIRAKTLA 460
+ +T S +GE V K + + QI L L A +A
Sbjct: 313 MLTTSSEWGEMVTKLTVPKEWKEWQIYALLFCLFMASVIA 352
>At3g06540.1 68416.m00758 GDP dissociation inhibitor family protein
/ Rab GTPase activator family protein similar to
SP|P26374 Rab proteins geranylgeranyltransferase
component A 2 (Rab escort protein 2) {Homo sapiens};
contains Pfam profile PF00996: GDP dissociation
inhibitor
Length = 563
Score = 27.1 bits (57), Expect = 7.7
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 221 LGDMEGEVKEIQMEIAAIKRDR-LDVMTKKQ-MNVFTPESEYLESTDSGFGESVNKASEE 394
+GD GE++ + AAI +D+ L ++ K Q M F +L S+ + K SEE
Sbjct: 159 VGDSSGELRNVPDSRAAIFKDKSLTLLEKNQLMKFFKLVQSHLASSTEKDDSTTVKISEE 218
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,246,341
Number of Sequences: 28952
Number of extensions: 174122
Number of successful extensions: 474
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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