Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305D09f
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    31   0.10 
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    27   1.7  
SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   3.9  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   5.1  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    25   6.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.0  

>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 350 LEGALRFQHLRYHVSQRFTMLLRSLNNDLPFLRPIGVLRDQKHEHSXALSPF 505
           ++   +FQ L+ +     T++L S NN+   L P+  L +Q H  S    PF
Sbjct: 627 IQPIFKFQALQNNADA--TLILNSYNNNSSSLSPVNTLANQAHSRSKRYLPF 676


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 53  LHMYIHIYKSCLSXKLVTNKKKLRCMHCISTSITSK*KNNQHLIKANLIIEK 208
           +H+  H++K  L   +V    K RC   + T       N+Q   + +++IEK
Sbjct: 539 VHLIGHLHKQNLLPVIVFVFSKKRCEEYVDTLTNRDLNNHQEKSEVHVVIEK 590


>SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +2

Query: 50  DLHMYIHIYKSCLSXKLVTNKKKLRCMHCISTSITSK*KNNQHLIKANLI 199
           D+ +YI + + C+  K   + +K+  +HC  T       NN+ ++  + I
Sbjct: 13  DVPVYI-LLRKCVIYKFAYSSRKIESVHCAITDDEVMSYNNEDMVPFSAI 61


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 21   LSHMYHLQSKTYICIYTYISRACQXN 98
            LSHM HL +K    IY   ++ C  N
Sbjct: 2150 LSHMSHLNAKEKAKIYCMFAQFCDNN 2175


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 451 RAKEGQIIIQGPEEHCKALGDM--ITEMLKAK 362
           R  EG+ +IQ PEE C  +  +  IT++L  K
Sbjct: 163 RISEGESVIQCPEESCTQIVSIQSITKVLDEK 194


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 372 SISVIMSPSALQCSSGP*IMICPSFALSGSSEIRSTNIPSPSA 500
           S S   SP +   +S   +    S  LSGSS I ST+  +PS+
Sbjct: 486 SSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSS 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,837,751
Number of Sequences: 5004
Number of extensions: 32099
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)