Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305D09f
         (518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0203 - 27487469-27489787                                         31   0.55 
04_03_0139 + 11727207-11727359,11727534-11727674,11728607-11728804     29   2.2  

>01_06_0203 - 27487469-27489787
          Length = 772

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +3

Query: 303 LLTAPKSLAFPWNLPFLKAPFAFSISVIMSPSALQCSSGP*IMICPS 443
           L    KS AFP  L +LK P++ ++    + SAL CS G   +  PS
Sbjct: 383 LFNGYKSPAFPGTL-YLKVPYSTNLQASSTQSALTCSPGSQEIATPS 428


>04_03_0139 + 11727207-11727359,11727534-11727674,11728607-11728804
          Length = 163

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 153 VIDVLIQCIQRNFFLLVTNLXDKH 82
           V+D+++  + RNFF L+ N+  +H
Sbjct: 75  VVDLIVTVVNRNFFRLIHNIHGRH 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,659,883
Number of Sequences: 37544
Number of extensions: 204744
Number of successful extensions: 502
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)