Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305D09f
         (518 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9849| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.0  
SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_57002| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_34083| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_21142| Best HMM Match : Endonuclease_NS (HMM E-Value=0)             27   9.3  

>SB_9849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 984

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 20  TVSYVPSTKQDLHMYIHIYKSCLSXKLVTNKKKLRCMH 133
           TV+ + ST+ DL    H++K C+S  ++   K+L  +H
Sbjct: 659 TVAAIVSTRSDLE---HVHKLCISEMIIRTAKQLFRVH 693


>SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -3

Query: 99  NLXDKHDLYMCIYICRSCFVDGTYETVQG 13
           N    H +Y  IY CR   +D  Y T  G
Sbjct: 703 NFRSYHMIYQLIYKCRIILIDTDYSTYSG 731


>SB_57002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 107 NKKKLRCMHCISTSITSK*KNNQHLIKANLII 202
           +++  RC HC  T +  K K +Q   +A +I+
Sbjct: 277 DERPRRCKHCSGTFVKGKLKEHQERCQAKMIV 308


>SB_34083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 580

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 35  PSTKQDLHMYIHIYKSCLSXKLVTNKKKLRCMH 133
           P    D H+  H+YK C++  L+ +K  + C H
Sbjct: 216 PLAAVDAHVAAHLYKHCITG-LLRHKTVILCTH 247


>SB_21142| Best HMM Match : Endonuclease_NS (HMM E-Value=0)
          Length = 387

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 337 QGKASDLGAVNKCKKLVEDYFNKLT*YFVLMLYNNL 230
           QGKA DL  V+ CK + + +  K+   F   L+N+L
Sbjct: 305 QGKAEDLCEVDGCKLMSQGFMEKI--IFCRKLHNSL 338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,899,219
Number of Sequences: 59808
Number of extensions: 252863
Number of successful extensions: 605
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)