Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305D09f
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-10|AAM75378.1|  749|Caenorhabditis elegans Splicing facto...    29   2.0  
U06932-1|AAA64937.1|  749|Caenorhabditis elegans CeSWAP protein.       29   2.0  
U97005-9|AAK72085.1|  829|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U32305-11|AAL50323.1|  663|Caenorhabditis elegans Splicing facto...    27   6.1  
U32305-9|AAM75380.1|  751|Caenorhabditis elegans Splicing factor...    27   6.1  
AF047660-9|AAC04433.3|  339|Caenorhabditis elegans Hypothetical ...    27   6.1  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    27   8.0  

>U32305-10|AAM75378.1|  749|Caenorhabditis elegans Splicing factor
           (suppressor ofwhite apricot) related protein 1, isoform
           a protein.
          Length = 749

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 303 LLTAPKSLAFPWNLPFLKAPFAFSI 377
           +L  PKS++ P NL  LK P +FS+
Sbjct: 513 MLQIPKSVSTPANLDILKTPISFSL 537


>U06932-1|AAA64937.1|  749|Caenorhabditis elegans CeSWAP protein.
          Length = 749

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 303 LLTAPKSLAFPWNLPFLKAPFAFSI 377
           +L  PKS++ P NL  LK P +FS+
Sbjct: 513 MLQIPKSVSTPANLDILKTPISFSL 537


>U97005-9|AAK72085.1|  829|Caenorhabditis elegans Hypothetical
           protein F19F10.9 protein.
          Length = 829

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 463 EDPDRAKEGQIIIQGPEEHCKALGDMIT 380
           ED    KEGQI I    E+C+ +G++ T
Sbjct: 520 EDVKPLKEGQIYIDSTTEYCRHVGEITT 547


>U32305-11|AAL50323.1|  663|Caenorhabditis elegans Splicing factor
           (suppressor ofwhite apricot) related protein 1, isoform
           b protein.
          Length = 663

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 315 PKSLAFPWNLPFLKAPFAFSI 377
           PKS++ P NL  LK P +FS+
Sbjct: 431 PKSVSTPANLDILKTPISFSL 451


>U32305-9|AAM75380.1|  751|Caenorhabditis elegans Splicing factor
           (suppressor ofwhite apricot) related protein 1, isoform
           d protein.
          Length = 751

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 315 PKSLAFPWNLPFLKAPFAFSI 377
           PKS++ P NL  LK P +FS+
Sbjct: 519 PKSVSTPANLDILKTPISFSL 539


>AF047660-9|AAC04433.3|  339|Caenorhabditis elegans Hypothetical
           protein T09A12.1 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 225 DTNHSCFSIIRLALIRC*LFFY 160
           D N S FS + L ++RC LF+Y
Sbjct: 286 DENKSKFSTMALLIVRCDLFYY 307


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = -2

Query: 511  RAERAEGXGMFVLLISEDPDRAKEGQIIIQGPEEHCKALGDMITEMLKAKGAFK 350
            +AERAE     V+ +SE+ ++A+E +  I  P E  K    M+ E+ K +   K
Sbjct: 1681 QAERAEDEAAHVVPVSEEKEKAEEVEDPIVPPVEFNKHT-PMMRELAKRRRKLK 1733


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,208,819
Number of Sequences: 27780
Number of extensions: 182760
Number of successful extensions: 446
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)