Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305D09f
         (518 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65410.1 68414.m07421 ABC transporter family protein contains...    28   3.3  
At1g51470.1 68414.m05793 glycosyl hydrolase family 1 protein con...    28   4.3  
At4g33625.1 68417.m04776 expressed protein                             27   5.7  

>At1g65410.1 68414.m07421 ABC transporter family protein contains
           similarity to toluene tolerance protein Ttg2A GI:4336798
           from [Pseudomonas putida]
          Length = 345

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 399 ALQCSSGP*IMICPSFALSGSSEIRSTNIPSPSALSAR 512
           +L CSS    ++ PS    GSS ++S  +P  S +S R
Sbjct: 3   SLSCSSSSSSLLPPSLHYHGSSSVQSIVVPRRSLISFR 40


>At1g51470.1 68414.m05793 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to Myrosinase precursor (SP:P37702) [Arabidopsis
           thaliana]; similar to thioglucosidase (GI:871992)
           [Arabidopsis thaliana]
          Length = 511

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 311 GSQITGF-PLESAVLEGALRFQHLRYHVSQRFT 406
           G ++  F P ESA+++G+L F  L Y+VSQ  T
Sbjct: 325 GDRLPEFTPEESALVKGSLDFLGLNYYVSQYAT 357


>At4g33625.1 68417.m04776 expressed protein
          Length = 200

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = -3

Query: 192 LALIRC*LFFYLLVIDVLIQCIQRNFFLLVTNLXDKHDLYMCIYICR----SCFV 40
           L + RC   F L+   + I C+  N    V +  D HDL+  I+ C     +CFV
Sbjct: 31  LVVCRC---FSLVTSLIAILCVVVNVLAAVRSFRDSHDLFDGIFRCYAVVIACFV 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,467,620
Number of Sequences: 28952
Number of extensions: 166532
Number of successful extensions: 417
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)