Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305D08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    56   2e-08
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30...    52   3e-07
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515...    29   2.3  
02_05_0448 - 29100674-29100716,29100821-29100902,29101010-291011...    29   3.0  
01_06_1124 - 34679205-34680926,34681438-34682811                       27   6.9  
11_06_0707 + 26467214-26470309                                         27   9.1  
11_06_0698 + 26385989-26389090                                         27   9.1  
06_03_0526 + 21771519-21771607,21771685-21771810,21771890-217720...    27   9.1  

>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
 Frame = +3

Query: 279 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 458
           C   + +QI  E  AS  Y ++ AYF  D V   GFAK F +++ EER+HA KL+ Y  M
Sbjct: 91  CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150

Query: 459 RG---KLTGSVTNLITYRAP 509
           RG   +L   VT L  +  P
Sbjct: 151 RGGRVRLQSIVTPLTEFDHP 170


>11_01_0040 -
           304439-304482,304589-304652,304766-304831,305509-305640,
           305744-305804,305885-306018,306310-306654
          Length = 281

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
 Frame = +3

Query: 312 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 482
           E  AS  Y ++ AYF  D V   GFAK F +++ EER+HA KLI Y  MRG   +L   V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193

Query: 483 TNLITYRAP 509
           T L  +  P
Sbjct: 194 TPLTEFDHP 202


>02_05_0624 -
           30451032-30451140,30451294-30451409,30451506-30451580,
           30452033-30452093,30452198-30452424
          Length = 195

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 339 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLL 455
           A+  YF + TV  P  A  FF +   +RE  T L+D LL
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL 151


>02_05_0448 -
           29100674-29100716,29100821-29100902,29101010-29101130,
           29101481-29101546,29101628-29101735,29102083-29102148,
           29102605-29102633,29102773-29102902
          Length = 214

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -1

Query: 260 PLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRFFDDIQKN 111
           P+I  G+  D  +  C          D KE  PH       RFF+D +KN
Sbjct: 129 PMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPH-RLQEIRRFFEDYKKN 177


>01_06_1124 - 34679205-34680926,34681438-34682811
          Length = 1031

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 323 VNPVLSHGGLLLDRYGEPPRLREA 394
           +NP + H G ++D  G   RLREA
Sbjct: 355 INPDVKHFGCIIDMLGRAGRLREA 378


>11_06_0707 + 26467214-26470309
          Length = 1031

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = -1

Query: 521 RRVGGGPVRDEVGYGACQLAPHEQVVNELGRVLAFFSRSIEE*LREAGAVHRIDREVSPH 342
           R+ GG P+   V   A  LA  EQ  NE  R+L   + S+ +  RE      +  EV PH
Sbjct: 361 RKCGGLPLAIRVI--ATVLASQEQTENEWRRILGKNAWSMSKLPRELSGALYLSYEVLPH 418


>11_06_0698 + 26385989-26389090
          Length = 1033

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = -1

Query: 521 RRVGGGPVRDEVGYGACQLAPHEQVVNELGRVLAFFSRSIEE*LREAGAVHRIDREVSPH 342
           R+ GG P+   V   A  LA  EQ  NE  R+L   + S+ +  RE      +  EV PH
Sbjct: 361 RKCGGLPLAIRVI--ATVLASQEQTENEWRRILGKNAWSMSKLPRELSGALYLSYEVLPH 418


>06_03_0526 +
           21771519-21771607,21771685-21771810,21771890-21772010,
           21772123-21772851,21772954-21773349,21774594-21774665,
           21774741-21774803,21775236-21775337
          Length = 565

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 299 TDPGGSGRVNPVLSHGGLLLDRYGEPP 379
           T  G S   +P   HGGLL   YGE P
Sbjct: 185 TSVGASAAADPSPVHGGLLAPVYGEFP 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,482,097
Number of Sequences: 37544
Number of extensions: 247243
Number of successful extensions: 598
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)