Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305D07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyc...    28   0.73 
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    27   1.3  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    27   2.2  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    26   3.0  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    26   3.9  
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    25   9.0  

>SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 300

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 326 SITTIDVYSFLWGYSDPLISQAYNIVPGIVYFDKFGIMDRLY 451
           S+T ++   F    S PL+ +A ++ PG+ Y   + I+ R+Y
Sbjct: 49  SLTQLNTVIFRDAASAPLLQKATSLFPGLGYAACYKIVQRIY 90


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 502 PVFITDSHPHSVNGLVVVESVHDPEFIKVDD 410
           PV+    HPH +N  V       P+ I VDD
Sbjct: 109 PVWSASLHPHKINTFVASLLDESPQLIIVDD 139


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 514 FYAEPV-FITDSHPHSVNGLVVVESVHDPEFIKVDDSRDNVVGLRDQRV 371
           +Y  P  F T     ++NG   V++  D  ++   D  DNVVGL+D +V
Sbjct: 592 YYKAPKEFATFESAKNLNGKSFVDNFKDRYYMYKQDI-DNVVGLKDFKV 639


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 46  GRRSQFKRTRSWTVYLRRNKAEH 114
           G +SQFKR RS +   R++ A+H
Sbjct: 638 GNKSQFKRLRSTSTPARQDLAQH 660


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -3

Query: 330 MDLQLRVENSSLNVFLMKNGKELTNEATLKRARLGTVTITSSGLATDCSGTKRSFMF 160
           M L+   +   +N+F+ KN ++  ++  LK       TITS+ + TD  G  + F F
Sbjct: 353 MKLEKMNKYQGVNLFI-KNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGF 408


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 161 NMKLRFVPEQSVARPEDVIV 220
           N+K+  VP+ ++  P+DVIV
Sbjct: 47  NVKIAEVPKPTITHPKDVIV 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,233,892
Number of Sequences: 5004
Number of extensions: 45375
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)