Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305D07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225           30   1.3  
09_04_0638 + 19156749-19157312                                         29   3.0  
03_04_0143 + 17670103-17670430,17670511-17670785,17670897-176713...    28   4.0  
07_03_0288 + 16285485-16285721,16285811-16286184,16286499-162868...    27   6.9  
04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773...    27   6.9  

>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
          Length = 467

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 44  SGEDHSLNVQEVGPFTYAEIRQNI 115
           SGE+H L ++ VGP  Y E ++N+
Sbjct: 391 SGEEHPLALESVGPQCYPECQENV 414


>09_04_0638 + 19156749-19157312
          Length = 187

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
 Frame = -2

Query: 505 EPVFIT--DSHPHSVNGLVVVESVHDPEFIKVDDSRDN-----VVGLR 383
           EPVF +  + HPH+V  L V E  H P  + + +S  +     +VGLR
Sbjct: 20  EPVFFSNVEPHPHAVKVLAVRELKHAPALLHLLESASSDHGCKIVGLR 67


>03_04_0143 +
           17670103-17670430,17670511-17670785,17670897-17671376,
           17671454-17671849,17673215-17673289,17673939-17673960,
           17674041-17674129,17675204-17675495,17676019-17676087,
           17676394-17676572
          Length = 734

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 316 QLQVHNDHR--CIQLSMGIQ*PSDLASLQHCPWNRLL**IRDHGQTLRQQDHLQNEGGN 486
           QLQ  ND R   +++  G+      ASLQ     ++    RD+GQT  QQ  LQ    N
Sbjct: 249 QLQCQNDQRGEIVRVEHGLSLLQPYASLQEQQQEQVQ--SRDYGQTQYQQKQLQGSCSN 305


>07_03_0288 +
           16285485-16285721,16285811-16286184,16286499-16286892,
           16286917-16287806,16291189-16291446,16291518-16291628,
           16291697-16291775,16291880-16291972,16292095-16292280
          Length = 873

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +2

Query: 32  QEFMSGEDHSLNVQEVGPFTYAEIRQNIDIDLDEEAGELEFTPNMKLRFVPEQSVARP 205
           Q  ++ +   L +QE+ P   +E  Q     L   AGE+E  P   +   PEQS + P
Sbjct: 486 QSVLAKQQSQLAIQEMSPAQPSEPVQAEPTKL--AAGEIEAVPEQPMPDQPEQSQSEP 541


>04_04_1284 +
           32376870-32376874,32376876-32376935,32377166-32377301,
           32377439-32377596,32377791-32377881,32377975-32378094,
           32378166-32378234,32378354-32378445,32378578-32378680,
           32378761-32378868,32378949-32379011,32379073-32379144,
           32379322-32379399,32379478-32379540,32379617-32379680,
           32379817-32379902,32380456-32380569,32380760-32380837,
           32381068-32381303,32381486-32381576,32381706-32381894,
           32382082-32382117
          Length = 703

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = +2

Query: 68  VQEVGPFTYAEI--RQNIDIDLDEEAGELEFTPNMKLRFVPEQS---VARPE 208
           ++ V PF YAE+  +  +D+D +++A  LE    +    + + S    +RPE
Sbjct: 325 LRSVRPFHYAEVVLKDEVDVDPNDQASVLEHLDKIVRNLIKKSSQPTASRPE 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,709,220
Number of Sequences: 37544
Number of extensions: 306734
Number of successful extensions: 704
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)