Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305D07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38947| Best HMM Match : CD36 (HMM E-Value=1.4e-15)                  47   8e-06
SB_50699| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   3e-05
SB_47539| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.009
SB_17742| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_5474| Best HMM Match : DUF1460 (HMM E-Value=4.5)                    32   0.25 
SB_16410| Best HMM Match : DUF1306 (HMM E-Value=5.7)                   31   0.58 
SB_45604| Best HMM Match : Lipase_GDSL (HMM E-Value=4.1)               31   0.58 
SB_48424| Best HMM Match : PSI (HMM E-Value=0.4)                       29   1.8  
SB_4370| Best HMM Match : PSI (HMM E-Value=0.4)                        29   1.8  
SB_35985| Best HMM Match : Sushi (HMM E-Value=2.4)                     29   2.3  
SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35)           28   5.4  
SB_20810| Best HMM Match : rve (HMM E-Value=0.00014)                   28   5.4  
SB_3284| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)         27   7.1  
SB_25688| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_35949| Best HMM Match : Cadherin (HMM E-Value=0)                    27   9.4  
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    27   9.4  

>SB_38947| Best HMM Match : CD36 (HMM E-Value=1.4e-15)
          Length = 314

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 39/132 (29%), Positives = 54/132 (40%), Gaps = 4/132 (3%)
 Frame = +2

Query: 5   LYVFNVTNAQEFMSGEDHSLNVQEVGPFTYAE--IRQNIDIDLDEEAGELEFTPNMKLRF 178
           LYVF+V N  E  SG      ++E+GP+TY E  +++NI  + DE    + +       F
Sbjct: 66  LYVFHVVNPDEVRSGATPV--IRELGPYTYREYLLKENITFNQDETL--VSYNQKKWYVF 121

Query: 179 VPEQSVA--RPEDVIVTVPNXXXXXXXXXXXXXPFFIRNTFKLLFSTLNCKSITTIDVYS 352
            PE S +   PE   VT  N                +R     L          T  V  
Sbjct: 122 TPELSCSGCDPEADSVTTVNIAYAIMTEVAKSYSRIVRVGIDALLKYEKEHLFMTRTVRE 181

Query: 353 FLWGYSDPLISQ 388
            LWGY DPL ++
Sbjct: 182 VLWGYDDPLFAE 193


>SB_50699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 43/163 (26%), Positives = 65/163 (39%), Gaps = 9/163 (5%)
 Frame = +2

Query: 8   YVFNVTNAQEFMSGEDHSLNVQEVGPFTYAEIRQNIDIDLDEEAGELEFTPNMKLRFVPE 187
           +VF++ N  E M+G +    V E GP++Y E R    ++   +   + F PN    F PE
Sbjct: 4   FVFDLQNPAEVMNGSELPY-VIERGPYSYKETRSVDILNYSADKSIVTFMPNRTFIFDPE 62

Query: 188 QSVARPEDVIVTVPNXXXXXXXXXXXXXPFFIRNTFKLLF---STLNCKSITTI----DV 346
            S     D   T  N                 ++   + F     +  K+   +     V
Sbjct: 63  TSCKGCNDTTDTFTNVNIPLLTLALWLKTTDYKSKHSICFQGVEVILLKNKAALFQAKTV 122

Query: 347 YSFLWGYSDPLISQAYNIVPGIVYFDKFGI--MDRLYDNKTIY 469
           Y  LWGY DP+++   N VP I    K G+    +L  N T Y
Sbjct: 123 YEILWGYVDPVLND-INDVPSIFCPKKEGLDPFIQLQYNNTYY 164


>SB_47539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 515

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 4/134 (2%)
 Frame = +2

Query: 8   YVFNVTNAQEFMSGEDHSLNVQEVGPFTYAEIRQNIDIDLDEEAGELEFTPNMKLRFVPE 187
           ++FNV N  E  +G    L V + GP++Y E R+  +I   +    + +       F P 
Sbjct: 74  FIFNVVNEMEAKNGSP--LVVAQQGPYSYREYRRKENITWCKMNSTVTYNEKQWFVFDPA 131

Query: 188 QS--VARPEDVIVTVPNXXXXXXXXXXXXXP--FFIRNTFKLLFSTLNCKSITTIDVYSF 355
            S     P   +VT  N                F  +    LLF   +        V+  
Sbjct: 132 TSCNTCDPYKDVVTTVNVPLVTLAGVLKNLKDTFHWKELVTLLFDEFSETLFEKRTVHEM 191

Query: 356 LWGYSDPLISQAYN 397
           LWGY+D ++ + YN
Sbjct: 192 LWGYNDTMLMK-YN 204


>SB_17742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 386 QAYNIVPGIVYFDKFGIM-DRLYDNKTIYRMRVGI 487
           +A+++ P + + D   I  D LYDNK I R RVG+
Sbjct: 94  RAFHVPPTVYFIDNENISADMLYDNKHILRRRVGV 128


>SB_5474| Best HMM Match : DUF1460 (HMM E-Value=4.5)
          Length = 426

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 386 QAYNIVPGIVYFDKFGIM-DRLYDNKTIYRMRVGI 487
           +A+++ P + + D   I  D LYDNK I R RVG+
Sbjct: 348 RAFHVPPTVSFIDNENICADMLYDNKHILRRRVGV 382


>SB_16410| Best HMM Match : DUF1306 (HMM E-Value=5.7)
          Length = 396

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 401 VPGIVYFDKFGIM-DRLYDNKTIYRMRVGI 487
           VP  VYF    I  D LYDNK I R RVG+
Sbjct: 63  VPPTVYFINENISADMLYDNKHILRRRVGV 92


>SB_45604| Best HMM Match : Lipase_GDSL (HMM E-Value=4.1)
          Length = 310

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 386 QAYNIVPGIVYFDKFGIM-DRLYDNKTIYRMRVGI 487
           +A ++ P + + D   I  D LYDNK I R RVG+
Sbjct: 232 RALHVPPTVYFIDNENISADMLYDNKHILRRRVGV 266


>SB_48424| Best HMM Match : PSI (HMM E-Value=0.4)
          Length = 175

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 439 HDPEFIKVDDSRDNVVGLRDQRVTVSP*KAVYIDGRYGL 323
           HD E +K+   RD +  L  QR T    KA  I  +YGL
Sbjct: 123 HDKEELKMKRKRDEMTALHSQRKTERQAKADDIRKKYGL 161


>SB_4370| Best HMM Match : PSI (HMM E-Value=0.4)
          Length = 175

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 439 HDPEFIKVDDSRDNVVGLRDQRVTVSP*KAVYIDGRYGL 323
           HD E +K+   RD +  L  QR T    KA  I  +YGL
Sbjct: 123 HDKEELKMKRKRDEMTALHSQRKTERQAKADDIRKKYGL 161


>SB_35985| Best HMM Match : Sushi (HMM E-Value=2.4)
          Length = 391

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 353 SCIHRWSLWTCS*GW 309
           +C+HRWS++TC   W
Sbjct: 341 TCVHRWSVFTCVDSW 355



 Score = 28.3 bits (60), Expect = 4.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 353 SCIHRWSLWTCS*GW 309
           +C+HRWS++TC   W
Sbjct: 242 TCVHRWSVFTCVDRW 256



 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 368 CIPIESCIHRWSLWTCS*GW 309
           C  +  C+ RWSL+TC   W
Sbjct: 77  CYSVFICVDRWSLFTCVDRW 96


>SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35)
          Length = 1595

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 333  VMDLQLRVENSSLNVFLMKNGKELTNEATLKRARLGTVTITSSGL 199
            V + Q+R   S ++  L KNG++L +E+ L   R     + S  L
Sbjct: 1413 VWERQIRTVRSVISALLEKNGRQLNDESLLTFMREAEAVVNSRPL 1457


>SB_20810| Best HMM Match : rve (HMM E-Value=0.00014)
          Length = 801

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 333 VMDLQLRVENSSLNVFLMKNGKELTNEATLKRARLGTVTITSSGL 199
           V + Q+R   S ++  L KNG++L +E+ L   R     + S  L
Sbjct: 732 VWERQIRTVRSVISALLEKNGRQLNDESLLTFMREAEAVVNSRPL 776


>SB_3284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 131 EEAGELEFTPNMKLRFVPEQSVARPED 211
           EE+G++ F+ N+ LR VPE    +P++
Sbjct: 312 EESGKIPFSINIPLRQVPEAFTMKPKE 338


>SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)
          Length = 1898

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 333 VMDLQLRVENSSLNVFLMKNGKELTNEATL 244
           V++ Q+R   S ++  L KNG++L +E+ L
Sbjct: 818 VLERQIRTVRSVISTLLEKNGRQLNDESLL 847


>SB_25688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -1

Query: 452 RRVCP*SRIYQSRRFQGQCCRLARSEGHCIPIESC 348
           RRVCP    Y+S R       L  S+  C P E C
Sbjct: 111 RRVCPTVLTYKSHRECKGTVHLCNSDDECSPGERC 145


>SB_35949| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 521

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
 Frame = -3

Query: 345 TSMVVMDLQLRVENSSLNVFLMKNGKELTNEATLKRAR-LGTVTIT 211
           T+ V +D +  ++N+  NV++M+  + + N+ T+KR + +  VT+T
Sbjct: 460 TTRVRLDREELIKNTGSNVYIMQ-AEAMYNDTTIKRDKAIVIVTVT 504


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
 Frame = -3

Query: 345  TSMVVMDLQLRVENSSLNVFLMKNGKELTNEATLKRAR-LGTVTIT 211
            T+ V +D +  ++N+  NV++M+  + + N+ T+KR + +  VT+T
Sbjct: 996  TTRVRLDREELIKNTGSNVYIMQ-AEAMYNDTTIKRDKAIVIVTVT 1040


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,942,215
Number of Sequences: 59808
Number of extensions: 348991
Number of successful extensions: 1076
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)