Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305D07f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98866-17|CAB11566.3| 534|Caenorhabditis elegans Hypothetical p... 38 0.006
U29378-10|AAP40541.1| 975|Caenorhabditis elegans Adamts family ... 30 0.87
U29378-9|AAA68721.4| 1020|Caenorhabditis elegans Adamts family p... 30 0.87
AB072347-1|BAC41253.1| 1020|Caenorhabditis elegans ADAMTS-like p... 30 0.87
Z72506-4|CAA96619.1| 590|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z54270-3|CAA91027.2| 560|Caenorhabditis elegans Hypothetical pr... 30 1.2
U28729-6|AAA68292.1| 549|Caenorhabditis elegans Phosphodiestera... 28 3.5
U28729-5|AAO38607.1| 674|Caenorhabditis elegans Phosphodiestera... 28 3.5
U28729-4|AAN60496.1| 599|Caenorhabditis elegans Phosphodiestera... 28 3.5
U28729-3|AAO38608.1| 612|Caenorhabditis elegans Phosphodiestera... 28 3.5
U28729-2|AAK77625.1| 626|Caenorhabditis elegans Phosphodiestera... 28 3.5
U28729-1|ABB88209.1| 673|Caenorhabditis elegans Phosphodiestera... 28 3.5
U13642-1|AAG00041.1| 184|Caenorhabditis elegans Yeast ham (hydr... 28 3.5
AY052772-1|AAL14111.1| 184|Caenorhabditis elegans HAM-1-like pr... 28 3.5
Z82266-1|CAB05178.2| 626|Caenorhabditis elegans Hypothetical pr... 27 6.2
U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical pr... 27 6.2
U39470-1|AAC71119.2| 189|Caenorhabditis elegans Hypothetical pr... 27 8.1
>Z98866-17|CAB11566.3| 534|Caenorhabditis elegans Hypothetical
protein Y49E10.20 protein.
Length = 534
Score = 37.5 bits (83), Expect = 0.006
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Frame = +2
Query: 2 SLYVFNVTNAQEFMSGEDHSLNVQEVGPFTYAEIRQNIDIDLDEEAGELEFTPNMKL-RF 178
++++FNVTN + + N+ E+GPF + E+++ + + + F N KL F
Sbjct: 75 NIWMFNVTNVDGILKRHEKP-NLHEIGPFVFDEVQEKVYHRFADNDTRV-FYKNQKLYHF 132
Query: 179 VPEQSVARPE-DVIVTVPNXXXXXXXXXXXXXPFFIRNTFKL--LFSTLNCKSITTIDVY 349
S D+ VT+PN F +R F + + ++ T+ V
Sbjct: 133 NKNASCPTCHLDMKVTIPNIVFQKLIDAADVTIFGVRIKFAIESVLKMVSEAPYITVKVS 192
Query: 350 SFLW-GYSDPLI 382
L+ GY DP+I
Sbjct: 193 DALFDGYEDPII 204
>U29378-10|AAP40541.1| 975|Caenorhabditis elegans Adamts family
protein 2, isoform c protein.
Length = 975
Score = 30.3 bits (65), Expect = 0.87
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = -1
Query: 503 TCLHHGFPPSFCKWSCCRRVCP*SRIYQSRRFQGQCCRLARSEGHCIPIESC----IHRW 336
TC + G + +WS C RVC +SR G C A SE ++C + W
Sbjct: 859 TCQNDGIWSLWNEWSDCSRVCGKGLRSRSRSCFGSGCMGASSEQQFCNEQACASSSANDW 918
Query: 335 SLWTCS*GW 309
W+ GW
Sbjct: 919 GTWS---GW 924
>U29378-9|AAA68721.4| 1020|Caenorhabditis elegans Adamts family
protein 2, isoform a protein.
Length = 1020
Score = 30.3 bits (65), Expect = 0.87
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = -1
Query: 503 TCLHHGFPPSFCKWSCCRRVCP*SRIYQSRRFQGQCCRLARSEGHCIPIESC----IHRW 336
TC + G + +WS C RVC +SR G C A SE ++C + W
Sbjct: 859 TCQNDGIWSLWNEWSDCSRVCGKGLRSRSRSCFGSGCMGASSEQQFCNEQACASSSANDW 918
Query: 335 SLWTCS*GW 309
W+ GW
Sbjct: 919 GTWS---GW 924
>AB072347-1|BAC41253.1| 1020|Caenorhabditis elegans ADAMTS-like
protease protein.
Length = 1020
Score = 30.3 bits (65), Expect = 0.87
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = -1
Query: 503 TCLHHGFPPSFCKWSCCRRVCP*SRIYQSRRFQGQCCRLARSEGHCIPIESC----IHRW 336
TC + G + +WS C RVC +SR G C A SE ++C + W
Sbjct: 859 TCQNDGIWSLWNEWSDCSRVCGKGLRSRSRSCFGSGCMGASSEQQFCNEQACASSSANDW 918
Query: 335 SLWTCS*GW 309
W+ GW
Sbjct: 919 GTWS---GW 924
>Z72506-4|CAA96619.1| 590|Caenorhabditis elegans Hypothetical
protein F07A5.3 protein.
Length = 590
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +2
Query: 8 YVFNVTNAQEFMSGEDHSLNVQEVGPFTYAEIRQNIDIDLDEEAGELEFTPNMK 169
Y FNVTN E + + N+ E+GPF+ E Q ++ ++ ++ F N K
Sbjct: 73 YFFNVTNPDE-VKYYSAAPNLVEIGPFSVMESEQKKYLEFSDDKSQM-FYQNYK 124
>Z54270-3|CAA91027.2| 560|Caenorhabditis elegans Hypothetical
protein F11C1.3 protein.
Length = 560
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +2
Query: 2 SLYVFNVTNAQEFMSGEDHSLNVQEVGPFTYAEIRQNIDIDLDEEAGELEFTPNMKLRFV 181
+ ++FNVTN E + + N+ E+GP+TY E + E+ + N +
Sbjct: 67 TFHLFNVTNPDEVLY-YGATPNMLEIGPYTYTETEFKDFTQFRDNDNEIFYVNNKTWVYD 125
Query: 182 PEQS 193
P +S
Sbjct: 126 PTRS 129
>U28729-6|AAA68292.1| 549|Caenorhabditis elegans Phosphodiesterase
protein 4, isoforma protein.
Length = 549
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 362 GYSDPLISQAYNIVPGIVYFDKFGIMDRLYDNKTIYRMRV 481
G+ D ++ Y +VY D I+D+L +N+ Y+ R+
Sbjct: 493 GFIDYIVHPLYETWADLVYPDAQNILDQLEENREWYQSRI 532
>U28729-5|AAO38607.1| 674|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformd protein.
Length = 674
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 362 GYSDPLISQAYNIVPGIVYFDKFGIMDRLYDNKTIYRMRV 481
G+ D ++ Y +VY D I+D+L +N+ Y+ R+
Sbjct: 618 GFIDYIVHPLYETWADLVYPDAQNILDQLEENREWYQSRI 657
>U28729-4|AAN60496.1| 599|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformc protein.
Length = 599
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 362 GYSDPLISQAYNIVPGIVYFDKFGIMDRLYDNKTIYRMRV 481
G+ D ++ Y +VY D I+D+L +N+ Y+ R+
Sbjct: 543 GFIDYIVHPLYETWADLVYPDAQNILDQLEENREWYQSRI 582
>U28729-3|AAO38608.1| 612|Caenorhabditis elegans Phosphodiesterase
protein 4, isoforme protein.
Length = 612
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 362 GYSDPLISQAYNIVPGIVYFDKFGIMDRLYDNKTIYRMRV 481
G+ D ++ Y +VY D I+D+L +N+ Y+ R+
Sbjct: 556 GFIDYIVHPLYETWADLVYPDAQNILDQLEENREWYQSRI 595
>U28729-2|AAK77625.1| 626|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformb protein.
Length = 626
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 362 GYSDPLISQAYNIVPGIVYFDKFGIMDRLYDNKTIYRMRV 481
G+ D ++ Y +VY D I+D+L +N+ Y+ R+
Sbjct: 570 GFIDYIVHPLYETWADLVYPDAQNILDQLEENREWYQSRI 609
>U28729-1|ABB88209.1| 673|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformg protein.
Length = 673
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 362 GYSDPLISQAYNIVPGIVYFDKFGIMDRLYDNKTIYRMRV 481
G+ D ++ Y +VY D I+D+L +N+ Y+ R+
Sbjct: 617 GFIDYIVHPLYETWADLVYPDAQNILDQLEENREWYQSRI 656
>U13642-1|AAG00041.1| 184|Caenorhabditis elegans Yeast ham
(hydroxylaminopurinesensitivity) related protein 1
protein.
Length = 184
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 110 NIDIDLDEEAGELEFTPNMKLR 175
N+D+DLDE GE EF K R
Sbjct: 30 NVDVDLDEFQGEPEFIAERKCR 51
>AY052772-1|AAL14111.1| 184|Caenorhabditis elegans HAM-1-like
protein protein.
Length = 184
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 110 NIDIDLDEEAGELEFTPNMKLR 175
N+D+DLDE GE EF K R
Sbjct: 30 NVDVDLDEFQGEPEFIAERKCR 51
>Z82266-1|CAB05178.2| 626|Caenorhabditis elegans Hypothetical
protein F23B2.3 protein.
Length = 626
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 65 NVQEVGPF-TYAEIRQNIDIDLDEEAGELEFTP 160
N QE PF TY + ++ + L+EE G++EF P
Sbjct: 393 NFQECTPFETYNCVNNSLSL-LNEETGKMEFQP 424
>U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical
protein F48E3.3 protein.
Length = 1493
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -2
Query: 490 TDSHPHSVNGLVVVESVHDPEFIKVDDSRD 401
TDSHP S++G V ++ + E+ VD+S +
Sbjct: 205 TDSHPVSLSGYGVELAIKNTEYKAVDESSE 234
>U39470-1|AAC71119.2| 189|Caenorhabditis elegans Hypothetical
protein T08H4.2 protein.
Length = 189
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 278 FIRNTFKLLFSTLNCKSITTIDVYS 352
F+R F +L T+NC S +T YS
Sbjct: 116 FVRGMFSMLILTINCISCSTSSRYS 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,450,822
Number of Sequences: 27780
Number of extensions: 260895
Number of successful extensions: 747
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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