Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305D07f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24225.1 68416.m03040 CLE19, putative CLAVATA3/ESR-Related 19...    28   4.4  
At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family...    27   7.7  
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative...    27   7.7  

>At3g24225.1 68416.m03040 CLE19, putative CLAVATA3/ESR-Related 19
           (CLE19)
          Length = 74

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 351 LYTSMVVMDLQLRVENSSLNVFLMKNGKELTNEATLKRARLGTVTITSS 205
           L +S++++    + E++S+   LM NG     E  LK   +GT+  +S+
Sbjct: 9   LASSLLILAFIHQSESASMRSLLMNNGSYEEEEQVLKYDSMGTIANSSA 57


>At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family
           protein
          Length = 571

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/47 (21%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
 Frame = +2

Query: 101 IRQNIDIDLD---EEAGELEFTPNMKLRFVPEQSVARPEDVIVTVPN 232
           +R+++ ++ D   E+   ++FT ++ +  VPE+ V+  ++++  +P+
Sbjct: 395 VRRSLSLNFDSYPEDERTMDFTDDIPIDQVPEEDVSSDDEILSILPD 441


>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
           PABP, putative
          Length = 662

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 294 NVFLMKNGKELTNEATLKRARLGTVTITSSGLATDCSGTKRSFMF 160
           N+F+    K + N+ TL  A  G  TI S  +ATD  G  R + F
Sbjct: 135 NLFVKNLDKSVDNK-TLHEAFSGCGTIVSCKVATDHMGQSRGYGF 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,788,133
Number of Sequences: 28952
Number of extensions: 243592
Number of successful extensions: 605
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)