Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305D04f
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...    74   1e-14
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo...    26   3.7  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    25   6.5  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   8.5  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   8.5  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 74.1 bits (174), Expect = 1e-14
 Identities = 33/44 (75%), Positives = 40/44 (90%)
 Frame = +1

Query: 166 KSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQM 297
           KSAIN+VVTR+YT+++HKRL+GV FKKRAPRAIKEI  FA+K M
Sbjct: 6   KSAINQVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHM 49



 Score = 37.1 bits (82), Expect = 0.001
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 299 ETPDIRVDTRLNKFLWSKGVRNXPFXXXXXXXXXXNDDED 418
           +T ++RVD  LNK +W +G+RN P           +D++D
Sbjct: 50  QTKEVRVDPSLNKEVWKRGIRNVPHRLRLRLSRKRSDEDD 89


>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +1

Query: 181 EVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGNSGHSSRHPLKQIP 342
           E    +YT  LH RL      K  P+A++++R  A +Q+   G +    ++QIP
Sbjct: 354 EFFAPDYT--LHPRLTTKIENKNTPKALEDLRIRALEQLRYLGGAPSVQMQQIP 405


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 271 IRKFAEKQMGNSGHSSRHPLKQIP 342
           I++  +K++ N   S+R PL+QIP
Sbjct: 75  IKENTKKEISNPNDSTRLPLEQIP 98


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 175 INEVVTREYTVNLHKRLHGVGFKKRAPRAIKEI 273
           INE VT +Y  N+   + G+G  ++A   +K+I
Sbjct: 860 INEAVTNKYEANILPYIAGLG-PRKADYVLKKI 891


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 424 HKLFTLVTYVPGASIXGWQTE 486
           HK F ++  VP A++  W+ E
Sbjct: 602 HKCFPVLVIVPHATVANWERE 622


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,000,140
Number of Sequences: 5004
Number of extensions: 38032
Number of successful extensions: 56
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)