Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305D04f
         (504 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0140 + 12255418-12255512,12257514-12257793                       79   3e-15
08_02_1181 - 24985963-24986242,24987109-24987197                       75   3e-14
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649     58   3e-09
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316...    27   8.6  

>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 36/51 (70%), Positives = 42/51 (82%)
 Frame = +1

Query: 148 KGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMG 300
           K +R G +  +EVVTREYT+NLHKRLHG  FKK+AP AIKEIRKFA+K MG
Sbjct: 4   KKQRPGGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMG 54



 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +2

Query: 302 TPDIRVDTRLNKFLWSKGVRNXPFXXXXXXXXXXNDDED 418
           T D+RVD +LNK +WS G+R+ P           ND+ED
Sbjct: 55  TIDVRVDVKLNKHIWSSGIRSVPRRVRVRIARRRNDEED 93


>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 36/52 (69%), Positives = 42/52 (80%), Gaps = 1/52 (1%)
 Frame = +1

Query: 154 ERKGKSAINE-VVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGNS 306
           E+KG +A  E VVTREYT+NLHKRLH   FKK+AP AIKEIRKFA+K MG +
Sbjct: 3   EKKGGAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTT 54



 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +2

Query: 302 TPDIRVDTRLNKFLWSKGVRNXPFXXXXXXXXXXNDDED 418
           T D+RVD +LNK +WS G+R+ P           ND+ED
Sbjct: 53  TTDVRVDVKLNKHIWSSGIRSVPRRVRVRIARKRNDEED 91


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 33/59 (55%), Positives = 38/59 (64%), Gaps = 16/59 (27%)
 Frame = +1

Query: 178 NEVVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRKFAEKQMGNS 306
           +EVVTREYT+NLHKRLHG                  FKK+AP AIKEIRKFA+K MG +
Sbjct: 13  DEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKFAQKAMGTT 71



 Score = 40.3 bits (90), Expect = 9e-04
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 302 TPDIRVDTRLNKFLWSKGVRNXPFXXXXXXXXXXNDDED 418
           T DIR+D +LNK +W+ G+R+ P           ND+ED
Sbjct: 70  TTDIRIDVKLNKAIWTNGIRSVPRRVRVRISRKRNDEED 108


>05_01_0400 -
           3159370-3159385,3159599-3159703,3159972-3160006,
           3160134-3160272,3160457-3160605,3161052-3161173,
           3161296-3161417,3161779-3162033,3162108-3162271,
           3162311-3162489,3162593-3162767,3162916-3163002,
           3163144-3163446,3163539-3163594,3163813-3163894,
           3163972-3164039,3164779-3164835,3164926-3164991,
           3165121-3165192,3167363-3167459
          Length = 782

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 241 KKRAPRAIKEIRKFAEKQMGNSGHSSRHPLKQIPLV 348
           K  +P   +EI KFA  Q+     + RHPL  I ++
Sbjct: 218 KLESPDEAREILKFARAQVQKQAANLRHPLVCIDVI 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,150,564
Number of Sequences: 37544
Number of extensions: 216296
Number of successful extensions: 379
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)