Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305D04f
         (504 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   2e-09
SB_33454| Best HMM Match : PAN (HMM E-Value=0.0013)                    28   5.0  
SB_54154| Best HMM Match : HA2 (HMM E-Value=3.5e-22)                   28   5.0  
SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0)                        27   6.6  
SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 25/43 (58%), Positives = 32/43 (74%)
 Frame = +1

Query: 121 NFQITMAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKR 249
           +F   M K   ++KG+SAINEVVTREYT+NLHKR+HG+    R
Sbjct: 764 DFSFKMVKKTDKKKGRSAINEVVTREYTINLHKRIHGMNVPYR 806



 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 418 SAHKLFTLVTYVPGASIXGWQTENGDASQ 504
           S HKL+TLVT V  ++  G QT+  ++ +
Sbjct: 821 SPHKLYTLVTSVAVSTFKGLQTQKVESEE 849


>SB_33454| Best HMM Match : PAN (HMM E-Value=0.0013)
          Length = 459

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 323 CLLECPEFPICFSANFR 273
           CLL C E P+C S N+R
Sbjct: 34  CLLACQENPLCVSYNYR 50


>SB_54154| Best HMM Match : HA2 (HMM E-Value=3.5e-22)
          Length = 354

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 363 FLTPLDQRNLFKRVSTRMSGVSH 295
           F+ PLD++ L  +V TR++G SH
Sbjct: 321 FVYPLDKKKLADKVRTRLAGDSH 343


>SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1462

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -1

Query: 339  NLFKRVSTRMSGVSHLFFSELSDFFDCSWGTLFKSN 232
            +L KR S R + + ++ F++ + ++DC+   L K+N
Sbjct: 1427 DLLKRYSKRRAKLENITFADWAAWYDCAGKALCKTN 1462


>SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 943

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -1

Query: 339  NLFKRVSTRMSGVSHLFFSELSDFFDCSWGTLFKSN 232
            +L KR S R + + ++ F++ + ++DC+   L K+N
Sbjct: 908  DLLKRYSKRRAKLENITFADWAAWYDCAGKALCKTN 943


>SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 160 KGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRK 279
           K K  INEV+T  Y     + L      KR  R IKE+ +
Sbjct: 213 KNKPEINEVITPRYPPGEGEVLDDASIIKRYKRQIKELEE 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,484,303
Number of Sequences: 59808
Number of extensions: 261732
Number of successful extensions: 432
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)