Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305D04f
(504 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X15940-1|CAA34066.1| 125|Homo sapiens protein ( Human mRNA for ... 105 1e-22
BC070373-1|AAH70373.1| 125|Homo sapiens ribosomal protein L31 p... 105 1e-22
BC017343-1|AAH17343.1| 125|Homo sapiens ribosomal protein L31 p... 105 1e-22
AC016738-2|AAY14823.1| 125|Homo sapiens unknown protein. 105 1e-22
AB061830-1|BAB79468.1| 125|Homo sapiens ribosomal protein L31 p... 105 1e-22
X69181-1|CAA48925.1| 121|Homo sapiens ribosomal protein L31 pro... 103 4e-22
BC070210-1|AAH70210.1| 121|Homo sapiens RPL31 protein protein. 100 3e-21
AB007180-1|BAA25839.1| 47|Homo sapiens ribosomal protein L31 p... 30 5.3
>X15940-1|CAA34066.1| 125|Homo sapiens protein ( Human mRNA for
ribosomal protein L31. ).
Length = 125
Score = 105 bits (251), Expect = 1e-22
Identities = 61/120 (50%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Frame = +1
Query: 139 AKPKGERK-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGNSGHS 315
AK GE+K G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MG
Sbjct: 4 AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVR 63
Query: 316 SRHPLKQIPLV*GSQKXSLPCPCEAFTKT****RSAHKLFTLVTYVPGASIXGWQTENGD 495
L + G + K S +KL+TLVTYVP + QT N D
Sbjct: 64 IDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123
Score = 52.4 bits (120), Expect = 9e-07
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +2
Query: 302 TPDIRVDTRLNKFLWSKGVRNXPFXXXXXXXXXXNDDED 418
TPD+R+DTRLNK +W+KG+RN P+ N+DED
Sbjct: 59 TPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDED 97
>BC070373-1|AAH70373.1| 125|Homo sapiens ribosomal protein L31
protein.
Length = 125
Score = 105 bits (251), Expect = 1e-22
Identities = 61/120 (50%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Frame = +1
Query: 139 AKPKGERK-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGNSGHS 315
AK GE+K G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MG
Sbjct: 4 AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVR 63
Query: 316 SRHPLKQIPLV*GSQKXSLPCPCEAFTKT****RSAHKLFTLVTYVPGASIXGWQTENGD 495
L + G + K S +KL+TLVTYVP + QT N D
Sbjct: 64 IDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123
Score = 52.4 bits (120), Expect = 9e-07
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +2
Query: 302 TPDIRVDTRLNKFLWSKGVRNXPFXXXXXXXXXXNDDED 418
TPD+R+DTRLNK +W+KG+RN P+ N+DED
Sbjct: 59 TPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDED 97
>BC017343-1|AAH17343.1| 125|Homo sapiens ribosomal protein L31
protein.
Length = 125
Score = 105 bits (251), Expect = 1e-22
Identities = 61/120 (50%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Frame = +1
Query: 139 AKPKGERK-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGNSGHS 315
AK GE+K G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MG
Sbjct: 4 AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVR 63
Query: 316 SRHPLKQIPLV*GSQKXSLPCPCEAFTKT****RSAHKLFTLVTYVPGASIXGWQTENGD 495
L + G + K S +KL+TLVTYVP + QT N D
Sbjct: 64 IDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123
Score = 52.4 bits (120), Expect = 9e-07
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +2
Query: 302 TPDIRVDTRLNKFLWSKGVRNXPFXXXXXXXXXXNDDED 418
TPD+R+DTRLNK +W+KG+RN P+ N+DED
Sbjct: 59 TPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDED 97
>AC016738-2|AAY14823.1| 125|Homo sapiens unknown protein.
Length = 125
Score = 105 bits (251), Expect = 1e-22
Identities = 61/120 (50%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Frame = +1
Query: 139 AKPKGERK-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGNSGHS 315
AK GE+K G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MG
Sbjct: 4 AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVR 63
Query: 316 SRHPLKQIPLV*GSQKXSLPCPCEAFTKT****RSAHKLFTLVTYVPGASIXGWQTENGD 495
L + G + K S +KL+TLVTYVP + QT N D
Sbjct: 64 IDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123
Score = 52.4 bits (120), Expect = 9e-07
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +2
Query: 302 TPDIRVDTRLNKFLWSKGVRNXPFXXXXXXXXXXNDDED 418
TPD+R+DTRLNK +W+KG+RN P+ N+DED
Sbjct: 59 TPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDED 97
>AB061830-1|BAB79468.1| 125|Homo sapiens ribosomal protein L31
protein.
Length = 125
Score = 105 bits (251), Expect = 1e-22
Identities = 61/120 (50%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Frame = +1
Query: 139 AKPKGERK-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGNSGHS 315
AK GE+K G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MG
Sbjct: 4 AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVR 63
Query: 316 SRHPLKQIPLV*GSQKXSLPCPCEAFTKT****RSAHKLFTLVTYVPGASIXGWQTENGD 495
L + G + K S +KL+TLVTYVP + QT N D
Sbjct: 64 IDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 123
Score = 52.4 bits (120), Expect = 9e-07
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +2
Query: 302 TPDIRVDTRLNKFLWSKGVRNXPFXXXXXXXXXXNDDED 418
TPD+R+DTRLNK +W+KG+RN P+ N+DED
Sbjct: 59 TPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDED 97
>X69181-1|CAA48925.1| 121|Homo sapiens ribosomal protein L31
protein.
Length = 121
Score = 103 bits (247), Expect = 4e-22
Identities = 60/119 (50%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
Frame = +1
Query: 142 KPKGERK-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGNSGHSS 318
K GE+K G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MG
Sbjct: 1 KKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRI 60
Query: 319 RHPLKQIPLV*GSQKXSLPCPCEAFTKT****RSAHKLFTLVTYVPGASIXGWQTENGD 495
L + G + K S +KL+TLVTYVP + QT N D
Sbjct: 61 DTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVD 119
Score = 52.4 bits (120), Expect = 9e-07
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +2
Query: 302 TPDIRVDTRLNKFLWSKGVRNXPFXXXXXXXXXXNDDED 418
TPD+R+DTRLNK +W+KG+RN P+ N+DED
Sbjct: 55 TPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDED 93
>BC070210-1|AAH70210.1| 121|Homo sapiens RPL31 protein protein.
Length = 121
Score = 100 bits (239), Expect = 3e-21
Identities = 57/107 (53%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Frame = +1
Query: 139 AKPKGERK-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGNSGHS 315
AK GE+K G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKFA K+MG
Sbjct: 4 AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVR 63
Query: 316 SRHPLKQIPLV*GSQKXSLPCPCEAFTKT****RSAHKLFTLVTYVP 456
L + G + K S +KL+TLVTYVP
Sbjct: 64 IDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVP 110
Score = 52.4 bits (120), Expect = 9e-07
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +2
Query: 302 TPDIRVDTRLNKFLWSKGVRNXPFXXXXXXXXXXNDDED 418
TPD+R+DTRLNK +W+KG+RN P+ N+DED
Sbjct: 59 TPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDED 97
>AB007180-1|BAA25839.1| 47|Homo sapiens ribosomal protein L31
protein.
Length = 47
Score = 29.9 bits (64), Expect = 5.3
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 418 SAHKLFTLVTYVPGASIXGWQTENGD 495
S +KL+TLVTYVP + QT N D
Sbjct: 20 SPNKLYTLVTYVPVTTFKNLQTVNVD 45
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,272,317
Number of Sequences: 237096
Number of extensions: 1259274
Number of successful extensions: 5205
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5205
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4649883964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -