Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305D04f
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical pr...    85   2e-17
Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical pr...    52   2e-07
Z82274-5|CAB05227.1|  333|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical
           protein W09C5.6a protein.
          Length = 122

 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 49/120 (40%), Positives = 66/120 (55%)
 Frame = +1

Query: 145 PKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGNSGHSSRH 324
           PK E+K +S INEVVTREYT+++H R+ G+G KKRAPRAI EI+KFA+ QM  +      
Sbjct: 3   PKNEKKSRSTINEVVTREYTIHIHARIRGIGSKKRAPRAIDEIKKFAKIQMKTNDVRVDT 62

Query: 325 PLKQIPLV*GSQKXSLPCPCEAFTKT****RSAHKLFTLVTYVPGASIXGWQTENGDASQ 504
            L +     G +            +      SA KL+TL TYVP  +  G    N D+ +
Sbjct: 63  KLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDSEE 122



 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 21/44 (47%), Positives = 30/44 (68%)
 Frame = +2

Query: 287 KNRWETPDIRVDTRLNKFLWSKGVRNXPFXXXXXXXXXXNDDED 418
           K + +T D+RVDT+LNKF+WSKG++N P+          N+DED
Sbjct: 50  KIQMKTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNEDED 93


>Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical
           protein W09C5.6b protein.
          Length = 70

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 20/40 (50%), Positives = 28/40 (70%)
 Frame = +2

Query: 299 ETPDIRVDTRLNKFLWSKGVRNXPFXXXXXXXXXXNDDED 418
           +T D+RVDT+LNKF+WSKG++N P+          N+DED
Sbjct: 2   KTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNEDED 41



 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 418 SAHKLFTLVTYVPGASIXGWQTENGDASQ 504
           SA KL+TL TYVP  +  G    N D+ +
Sbjct: 42  SAQKLYTLCTYVPCTNFHGLTNVNVDSEE 70


>Z82274-5|CAB05227.1|  333|Caenorhabditis elegans Hypothetical
           protein JC8.7 protein.
          Length = 333

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 500 LASPFSVCQPXIDAPGT*VTSVNNLCADLHHHYVFVKASHG 378
           L  PF   +   DA GT +  ++    DL     F+K SHG
Sbjct: 69  LVGPFRKLRGESDADGTDLIMLDREMTDLPEMQTFMKCSHG 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,937,436
Number of Sequences: 27780
Number of extensions: 208266
Number of successful extensions: 357
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)