Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305D04f
         (504 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B) ribo...    77   9e-15
At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)            74   5e-14
At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)            73   8e-14
At4g20940.1 68417.m03034 leucine-rich repeat family protein cont...    27   5.4  
At4g36140.1 68417.m05144 disease resistance protein (TIR-NBS-LRR...    27   9.5  

>At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B)
           ribosomal protein L31, Nicotiana glutinosa, U23784
          Length = 119

 Score = 76.6 bits (180), Expect = 9e-15
 Identities = 35/49 (71%), Positives = 42/49 (85%)
 Frame = +1

Query: 154 ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMG 300
           E+KG+    EVVTREYT+NLH+RLH   FKK+AP+AIKEIRKFAEK+MG
Sbjct: 3   EKKGRK--EEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMG 49



 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 19/39 (48%), Positives = 23/39 (58%)
 Frame = +2

Query: 302 TPDIRVDTRLNKFLWSKGVRNXPFXXXXXXXXXXNDDED 418
           T D+RVD +LNK +WSKG+R  P           NDDED
Sbjct: 50  TKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDED 88


>At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)
          Length = 119

 Score = 74.1 bits (174), Expect = 5e-14
 Identities = 34/49 (69%), Positives = 41/49 (83%)
 Frame = +1

Query: 154 ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMG 300
           E+KG+    EV+TREYT+NLH+RLH   FKK+AP+AIKEIRKFAEK MG
Sbjct: 3   EKKGRK--EEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMG 49



 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 19/39 (48%), Positives = 23/39 (58%)
 Frame = +2

Query: 302 TPDIRVDTRLNKFLWSKGVRNXPFXXXXXXXXXXNDDED 418
           T D+RVD +LNK +WSKG+R  P           NDDED
Sbjct: 50  TKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDED 88


>At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)
          Length = 119

 Score = 73.3 bits (172), Expect = 8e-14
 Identities = 34/47 (72%), Positives = 37/47 (78%)
 Frame = +1

Query: 160 KGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMG 300
           KGK    EVVTREYT+NLH+RLH   FKK+AP AIKEIRKFA K MG
Sbjct: 3   KGKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMG 49



 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 19/39 (48%), Positives = 23/39 (58%)
 Frame = +2

Query: 302 TPDIRVDTRLNKFLWSKGVRNXPFXXXXXXXXXXNDDED 418
           T D+RVD +LNK +WSKG+R  P           NDDED
Sbjct: 50  TKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDED 88


>At4g20940.1 68417.m03034 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to leucine-rich
           repeat receptor-like protein kinase INRPK1 [Ipomoea nil]
           gi|14495542|gb|AAB36558
          Length = 977

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 60  YFLVSDEVM*FNYIFSFNILKFSDN 134
           Y ++S E+  FNY++   +LK S+N
Sbjct: 280 YNMLSGELPGFNYVYDLEVLKLSNN 304


>At4g36140.1 68417.m05144 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1607

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
 Frame = -1

Query: 282  ELSDFFDCSWGTLFKSNTMKSFV*INCIFTGNNFVYXXXXXXXXXXXSHCYLKILV--C* 109
            ++ D F  S+ TL   N    F+ I C F+G N  Y            H  + +LV  C 
Sbjct: 808  KIFDLFKSSYETL-DDNEKNIFLDIACFFSGENVDYVMRLLEGCGFFPHVGIDVLVENCL 866

Query: 108  MKICN*ITSLHHLQENRIRNI 46
            + I      +H + ++  R I
Sbjct: 867  VTISENRVKMHRIIQDFGREI 887


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,216,764
Number of Sequences: 28952
Number of extensions: 187788
Number of successful extensions: 324
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)