Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305D02f
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72512-4|CAA96666.1|  328|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF125459-10|AAD12841.2|  177|Caenorhabditis elegans Serpentine r...    27   8.0  

>Z72512-4|CAA96666.1|  328|Caenorhabditis elegans Hypothetical
           protein R07B5.6 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -3

Query: 410 QNPSHYNKIHTQKSSNHVQIIASFFIINMIMIPTH--RFSKPS 288
           + PSH+N  HT     +V II  +F+ N +   +   RFS P+
Sbjct: 47  RGPSHWNSAHTMNHHIYV-IIMLYFLFNTLFFLSDFLRFSLPA 88


>AF125459-10|AAD12841.2|  177|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 23 protein.
          Length = 177

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 21/89 (23%), Positives = 38/89 (42%)
 Frame = -3

Query: 482 PCLYLNFIFF*VKLPSCTTTQHKCQNPSHYNKIHTQKSSNHVQIIASFFIINMIMIPTHR 303
           PC+ L  IFF V +   T  +++ +N   Y  I T      + +  + + +  I      
Sbjct: 73  PCVVLVTIFFIVTIYGLTMLEYRIKNVERYLAIFTL----IMGLQTTMYAVTQIYF---A 125

Query: 302 FSKPSLPQLLKTRIN*VGNLFCKFYIAVP 216
           F  PS+P +  T +    N+F   ++  P
Sbjct: 126 FLAPSIPSIRATMVLIAFNIFDVMHVYSP 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,434,857
Number of Sequences: 27780
Number of extensions: 203832
Number of successful extensions: 546
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)