Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305D02f
         (517 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g05497.1 68417.m00833 F-box family protein contains Pfam PF00...    27   5.7  
At3g17540.1 68416.m02240 F-box family protein similar to hypothe...    27   7.5  
At1g26160.1 68414.m03193 metal-dependent phosphohydrolase HD dom...    27   9.9  

>At4g05497.1 68417.m00833 F-box family protein contains Pfam
           PF00646: F-box domain; similar to SKP1 interacting
           partner 1 (GI:10716947) [Arabidopsis thaliana]; similar
           to F-box protein FBX13 (GI:6456110) [Mus musculus]
          Length = 246

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 434 CTTTQHKCQNPSHYNKIHTQKSSNHVQIIASFFII 330
           C + +  CQ+PS + KI  +   N V  +  F++I
Sbjct: 49  CKSWRRVCQDPSMWRKIDIRIKENLVNSVELFYVI 83


>At3g17540.1 68416.m02240 F-box family protein similar to
           hypothetical protein GB:AAD18122 from [Arabidopsis
           thaliana];contains Pfam PF00646: F-box domain; contains
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 396

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +2

Query: 359 HGLKIFGYVFYYNVMDSDICV 421
           H  KI  Y FYYN  D D CV
Sbjct: 158 HNYKILRYCFYYN--DQDACV 176


>At1g26160.1 68414.m03193 metal-dependent phosphohydrolase HD
           domain-containing protein contains Pfam profile PF01966:
           HD domain
          Length = 258

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 467 NFIFF*VKLPSCTTTQHKCQNPSHYNKIHTQKSSNHV 357
           NF+F     PS T    +CQ P   + + + +S NHV
Sbjct: 33  NFLFLGKPTPSSTIVSVRCQKPVS-DGVSSMESMNHV 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,468,732
Number of Sequences: 28952
Number of extensions: 175318
Number of successful extensions: 298
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)