Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305D01f
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   207   6e-55
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   207   6e-55
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    29   0.40 
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.53 
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    28   0.92 
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   3.7  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   6.5  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   6.5  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   6.5  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   6.5  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    25   8.6  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   8.6  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  207 bits (506), Expect = 6e-55
 Identities = 93/162 (57%), Positives = 123/162 (75%)
 Frame = +3

Query: 3   SSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRA 182
           ++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP  +HSR 
Sbjct: 2   ANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRF 61

Query: 183 RVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYH 362
           R+RK   A+R GRH G+GKR+GTA ARMP   +W                + KID+HLYH
Sbjct: 62  RIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYH 121

Query: 363 SLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARR 488
           +LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q +ARR
Sbjct: 122 TLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARR 163


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  207 bits (506), Expect = 6e-55
 Identities = 93/162 (57%), Positives = 123/162 (75%)
 Frame = +3

Query: 3   SSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRA 182
           ++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP  +HSR 
Sbjct: 2   ANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRF 61

Query: 183 RVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYH 362
           R+RK   A+R GRH G+GKR+GTA ARMP   +W                + KID+HLYH
Sbjct: 62  RIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYH 121

Query: 363 SLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARR 488
           +LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q +ARR
Sbjct: 122 TLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARR 163


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -2

Query: 143 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 54
           +I +H++DV  G+ V  LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 122 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 27
           +VLS +    ++D  +  PHLL  +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 178 ALVSAKTQKHVERVVTVALVREEVQPMRVCHRR 276
           ++V  K  K  E+++  AL RE V+P R  H++
Sbjct: 652 SVVEVKDAKAAEKILRYALFREVVKPKRKKHKK 684


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 439 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 347
           AF LW+YS+   L+L       +    W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
 Frame = +3

Query: 60  KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 206
           K WLDP  ++++  T + +++++ I    ++K+           P    + A   KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348

Query: 207 RRKGR 221
           R+  R
Sbjct: 349 RKSLR 353


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 114 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 230
           +++R  +KD +   +PV+V S A   ++T     G   G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 255 WLYLFSYQSHSDDPFYVLLCFCGHERGS 172
           W     Y+S   D FY ++ F  H RGS
Sbjct: 824 WGETMVYESIISDDFYSMIRFLVHHRGS 851


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 3   SSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 128
           S + + K L  S MRCG+K    W++ + +    NT+   +  K
Sbjct: 317 SYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -2

Query: 269 WHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDETILD 132
           ++  + C S  T   +    TC     +TSA +Y  RF+ D+   D
Sbjct: 297 YYAVVECDSVRTAKVI--YETCDGAEYETSANIYDLRFIPDDVTFD 340


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -2

Query: 479 LSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLHV 369
           LSL  K +   + +LL + + H HTLV E +TL+L V
Sbjct: 324 LSLPVKSVESSVQALLFMVLPHLHTLVNE-LTLKLFV 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,102
Number of Sequences: 5004
Number of extensions: 41272
Number of successful extensions: 137
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)