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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305D01f
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              259   1e-69
SB_31152| Best HMM Match : DUF112 (HMM E-Value=4.3)                    30   0.95 
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_57068| Best HMM Match : NAD4L (HMM E-Value=9.4)                     29   2.9  
SB_55696| Best HMM Match : SNF7 (HMM E-Value=0)                        27   8.9  
SB_55695| Best HMM Match : SNF7 (HMM E-Value=0)                        27   8.9  
SB_51940| Best HMM Match : Glyco_transf_22 (HMM E-Value=1.8)           27   8.9  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  259 bits (634), Expect = 1e-69
 Identities = 120/163 (73%), Positives = 136/163 (83%)
 Frame = +3

Query: 6   SLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRAR 185
           +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP  VHSRAR
Sbjct: 31  TLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIVHSRAR 90

Query: 186 VRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHS 365
           VRK  EAR KGRH G GKR+GTANARMPQK +W                AKKID H+YHS
Sbjct: 91  VRKADEARSKGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHS 150

Query: 366 LYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNK 494
           LYMK+KGNVFKNKRVLMEYIH+KKAEKAR+K+LSDQAEARRNK
Sbjct: 151 LYMKSKGNVFKNKRVLMEYIHKKKAEKARSKLLSDQAEARRNK 193


>SB_31152| Best HMM Match : DUF112 (HMM E-Value=4.3)
          Length = 400

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -2

Query: 272 LWHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGV 105
           L++TR+ C SSL    VT  S  + V      G+Y  R   D  +   L  VL G+
Sbjct: 108 LYNTRVTCDSSLYNTRVTCDSRMYLVLLTVLPGLYNTRVTCDSRMYLVLLTVLPGL 163


>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 177 RARVRKNTEARRKGRHCGFGKRRGTANAR 263
           +A  RK    RR+ R  G  K+R TANAR
Sbjct: 17  KANSRKKRRRRRRPRLTGLSKQRQTANAR 45


>SB_57068| Best HMM Match : NAD4L (HMM E-Value=9.4)
          Length = 177

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -2

Query: 272 LWHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGV 105
           L++TR+ C S L  A VT  S  + V      G+Y  R   D  +   +  VL G+
Sbjct: 68  LYNTRVTCGSRLYNARVTCDSRMYLVLLTVLQGLYNTRVTCDSRMYLVILTVLPGL 123


>SB_55696| Best HMM Match : SNF7 (HMM E-Value=0)
          Length = 225

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 378 AKGNVFKNKRVLMEYIHRKK 437
           AK NV KNKR+ ++ + RKK
Sbjct: 61  AKANVKKNKRIALQALKRKK 80


>SB_55695| Best HMM Match : SNF7 (HMM E-Value=0)
          Length = 225

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 378 AKGNVFKNKRVLMEYIHRKK 437
           AK NV KNKR+ ++ + RKK
Sbjct: 61  AKANVKKNKRIALQALKRKK 80


>SB_51940| Best HMM Match : Glyco_transf_22 (HMM E-Value=1.8)
          Length = 414

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -2

Query: 272 LWHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGV 105
           L++T + C S L  A VT  S  + V      G+Y  R   D  +   L  VL G+
Sbjct: 192 LYNTGVTCDSCLYNARVTCDSRMYLVLLTVLPGLYNTRVTCDSRMYLVLLTVLPGL 247


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,463,479
Number of Sequences: 59808
Number of extensions: 337449
Number of successful extensions: 1114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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