BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS305D01f (507 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.) 259 1e-69 SB_31152| Best HMM Match : DUF112 (HMM E-Value=4.3) 30 0.95 SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2 SB_57068| Best HMM Match : NAD4L (HMM E-Value=9.4) 29 2.9 SB_55696| Best HMM Match : SNF7 (HMM E-Value=0) 27 8.9 SB_55695| Best HMM Match : SNF7 (HMM E-Value=0) 27 8.9 SB_51940| Best HMM Match : Glyco_transf_22 (HMM E-Value=1.8) 27 8.9 >SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 224 Score = 259 bits (634), Expect = 1e-69 Identities = 120/163 (73%), Positives = 136/163 (83%) Frame = +3 Query: 6 SLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRAR 185 +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP VHSRAR Sbjct: 31 TLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIVHSRAR 90 Query: 186 VRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHS 365 VRK EAR KGRH G GKR+GTANARMPQK +W AKKID H+YHS Sbjct: 91 VRKADEARSKGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHS 150 Query: 366 LYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNK 494 LYMK+KGNVFKNKRVLMEYIH+KKAEKAR+K+LSDQAEARRNK Sbjct: 151 LYMKSKGNVFKNKRVLMEYIHKKKAEKARSKLLSDQAEARRNK 193 >SB_31152| Best HMM Match : DUF112 (HMM E-Value=4.3) Length = 400 Score = 30.3 bits (65), Expect = 0.95 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = -2 Query: 272 LWHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGV 105 L++TR+ C SSL VT S + V G+Y R D + L VL G+ Sbjct: 108 LYNTRVTCDSSLYNTRVTCDSRMYLVLLTVLPGLYNTRVTCDSRMYLVLLTVLPGL 163 >SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 175 Score = 29.1 bits (62), Expect = 2.2 Identities = 14/29 (48%), Positives = 17/29 (58%) Frame = +3 Query: 177 RARVRKNTEARRKGRHCGFGKRRGTANAR 263 +A RK RR+ R G K+R TANAR Sbjct: 17 KANSRKKRRRRRRPRLTGLSKQRQTANAR 45 >SB_57068| Best HMM Match : NAD4L (HMM E-Value=9.4) Length = 177 Score = 28.7 bits (61), Expect = 2.9 Identities = 18/56 (32%), Positives = 26/56 (46%) Frame = -2 Query: 272 LWHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGV 105 L++TR+ C S L A VT S + V G+Y R D + + VL G+ Sbjct: 68 LYNTRVTCGSRLYNARVTCDSRMYLVLLTVLQGLYNTRVTCDSRMYLVILTVLPGL 123 >SB_55696| Best HMM Match : SNF7 (HMM E-Value=0) Length = 225 Score = 27.1 bits (57), Expect = 8.9 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +3 Query: 378 AKGNVFKNKRVLMEYIHRKK 437 AK NV KNKR+ ++ + RKK Sbjct: 61 AKANVKKNKRIALQALKRKK 80 >SB_55695| Best HMM Match : SNF7 (HMM E-Value=0) Length = 225 Score = 27.1 bits (57), Expect = 8.9 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +3 Query: 378 AKGNVFKNKRVLMEYIHRKK 437 AK NV KNKR+ ++ + RKK Sbjct: 61 AKANVKKNKRIALQALKRKK 80 >SB_51940| Best HMM Match : Glyco_transf_22 (HMM E-Value=1.8) Length = 414 Score = 27.1 bits (57), Expect = 8.9 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = -2 Query: 272 LWHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGV 105 L++T + C S L A VT S + V G+Y R D + L VL G+ Sbjct: 192 LYNTGVTCDSCLYNARVTCDSRMYLVLLTVLPGLYNTRVTCDSRMYLVLLTVLPGL 247 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,463,479 Number of Sequences: 59808 Number of extensions: 337449 Number of successful extensions: 1114 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 1064 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1110 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1111677931 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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