Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305D01f
(507 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 221 3e-58
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 220 5e-58
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 218 2e-57
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 46 2e-05
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 29 2.4
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 3.1
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 28 4.2
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain... 28 4.2
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 27 5.5
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 27 5.5
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila... 27 5.5
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 221 bits (539), Expect = 3e-58
Identities = 102/163 (62%), Positives = 122/163 (74%)
Frame = +3
Query: 6 SLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRAR 185
SLK+QKRLAASVM+CGK KVWLDPNE +I+ NSRQNIRK++KDG +I+KP +HSR+R
Sbjct: 3 SLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62
Query: 186 VRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHS 365
R EA+RKGRH G+GKR+GT AR+P K LW +KKIDRH+YH
Sbjct: 63 ARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHD 122
Query: 366 LYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNK 494
+YMK KGNVFKNKRVLME IH+ KAEKAR K L+DQ EA+R K
Sbjct: 123 MYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIK 165
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 220 bits (537), Expect = 5e-58
Identities = 101/163 (61%), Positives = 123/163 (75%)
Frame = +3
Query: 6 SLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRAR 185
SLKLQKRLA+SV++CGK+KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR+R
Sbjct: 3 SLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62
Query: 186 VRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHS 365
R+ A+RKGRH G+GKR+GT AR+P K LW KKIDRH+YH
Sbjct: 63 ARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHD 122
Query: 366 LYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNK 494
+YMK KGNVFKNKRVLME IH+ KAEKAR K LSDQ EA+R K
Sbjct: 123 MYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 165
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 218 bits (533), Expect = 2e-57
Identities = 101/163 (61%), Positives = 121/163 (74%)
Frame = +3
Query: 6 SLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRAR 185
SLKLQKRLAASVM+CGK KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR+R
Sbjct: 3 SLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSR 62
Query: 186 VRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHS 365
RK A+ KGRH G+GKR+GT AR+P K LW KKID+H+YH
Sbjct: 63 ARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHD 122
Query: 366 LYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNK 494
+YM+ KGNVFKNKRVLME IH+ KAEKAR K LSDQ EA+R K
Sbjct: 123 MYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 165
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +3
Query: 336 KKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 446
KKID+ +Y H ++MK KG V+KNK VLME +H+ E+
Sbjct: 29 KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 28.7 bits (61), Expect = 2.4
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -3
Query: 472 WSLSIFVLAFSAFFLWMYSMSTRL 401
W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 138 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 257
D + KK + + + ++RKN + RR+G G G RR A+
Sbjct: 77 DVIYWKKLLELENSGKIRKNPKPRRRGDKSGDGFRRTGAD 116
>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
protease, putative similar to cysteine proteinase RD21A
precursor (thiol protease) GI:435619, SP:P43297 from
[Arabidopsis thaliana]
Length = 463
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 160 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 65
GFL P +++L M + +S+IS+ NH
Sbjct: 2 GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33
>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1663
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 491 IAAGLSLVAKHLRPGLLSLLPVDVLH-EHTLVLEHITLRL 375
IA L KHL+P L+SL+P V H EH L + RL
Sbjct: 974 IALVLDRAPKHLQPDLVSLVPKLVEHSEHPLAALALIERL 1013
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 174 SRARVRKNTEARRKGRHCGFGKRRGTANARMPQKEL 281
SR+R R + +R +GR + R + ++ P+K+L
Sbjct: 209 SRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDL 244
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 333 AKKIDRHLYHSLYMKAKGNVFKNKRVL 413
A K+++ +Y Y KAKG + KN+RVL
Sbjct: 870 AGKVEK-IYDLAYEKAKGMLLKNRRVL 895
>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
{Mus musculus}
Length = 865
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 138 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGT 251
D L++ H R+ VR+ R +GR G G RRG+
Sbjct: 816 DELLLSLVEVKHGRSFVRRGGRGRGRGRGRGRGGRRGS 853
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,289,490
Number of Sequences: 28952
Number of extensions: 226766
Number of successful extensions: 633
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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