Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305C12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 38 0.001
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 32 0.045
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 32 0.060
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 31 0.079
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 31 0.10
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 30 0.18
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 30 0.18
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 30 0.24
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 29 0.32
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.32
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 29 0.32
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.42
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.56
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.56
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.56
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 28 0.73
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 0.73
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 27 1.3
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 27 2.2
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 26 3.0
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 26 3.0
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 3.0
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 26 3.9
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 26 3.9
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 26 3.9
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 26 3.9
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 3.9
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 25 5.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 5.2
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 5.2
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 25 5.2
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 25 5.2
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 25 5.2
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 25 5.2
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 25 5.2
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 25 5.2
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 25 5.2
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 25 5.2
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 25 6.8
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 6.8
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 25 6.8
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 25 9.0
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.0
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 25 9.0
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 25 9.0
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 9.0
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 9.0
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Frame = +3
Query: 63 ATMADAAVDKKEVAPEEVTSTEPKESPV---KKSPAKKVEAAESNGKENGTDEAPEDSPA 233
++ D + K + + +S EP + V KKS K+ ++ES + + ++ S +
Sbjct: 44 SSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSES 103
Query: 234 ENGDAEESNDASENGDATEKKETGVK 311
E+ +E + +SE+ + ++E VK
Sbjct: 104 ESSSSESESSSSESSSSESEEEVIVK 129
Score = 33.1 bits (72), Expect = 0.026
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +3
Query: 87 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESND- 263
+KKE + + + + ES + S ++ E E K T+E E S + D+E S+D
Sbjct: 158 EKKESSSDSSSESSSSESESESSSSESEEEEEVVEK---TEEKKEGSSESSSDSESSSDS 214
Query: 264 ASENGDATEKKET 302
+SE+GD+ ++
Sbjct: 215 SSESGDSDSSSDS 227
Score = 29.9 bits (64), Expect = 0.24
Identities = 18/83 (21%), Positives = 41/83 (49%)
Frame = +3
Query: 72 ADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAE 251
++++ + E E V TE K+ +S + E++ + E+G ++ DS +E+ +
Sbjct: 177 SESSSSESEEEEEVVEKTEEKKEGSSESSSDS-ESSSDSSSESGDSDSSSDSESESSSED 235
Query: 252 ESNDASENGDATEKKETGVKRKS 320
E +E A+E++ + + S
Sbjct: 236 EKKRKAE--PASEERPAKITKPS 256
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 32.3 bits (70), Expect = 0.045
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 90 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSP-AENGDAEE 254
K+E P E + +P SPV S K E +E K +DEAP+ +P AE+ EE
Sbjct: 485 KREKTPVEKSFPKPASSPVTFSEDVKKEPSEEK-KLEVSDEAPKAAPLAESKKVEE 539
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 105 PEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEES 257
PE ++PKES ++ P+K+ E + + +E + +N EE+
Sbjct: 430 PEAQPVSKPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEET 480
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 31.9 bits (69), Expect = 0.060
Identities = 14/60 (23%), Positives = 35/60 (58%)
Frame = +3
Query: 108 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDAT 287
E +S+E +S S ++ +++ + + + ++ +DS +++ D+ ES +SE+ D+T
Sbjct: 244 ESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDS-ESESSSEDSDST 302
Score = 29.9 bits (64), Expect = 0.24
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +3
Query: 117 TSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKK 296
+ +E + S + +ES G+D + S +E+ + E ND+S + +E +
Sbjct: 133 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESE 192
Query: 297 ET 302
+
Sbjct: 193 SS 194
Score = 29.9 bits (64), Expect = 0.24
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +3
Query: 117 TSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKK 296
+ +E + S + +ES G+D + S +E+ + E ND+S + +E +
Sbjct: 187 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESE 246
Query: 297 ET 302
+
Sbjct: 247 SS 248
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 31.5 bits (68), Expect = 0.079
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 138 SPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDA 284
+P+K+ PAK ++ + A SPA NG N+AS + A
Sbjct: 113 TPLKRGPAKGFNRNADEKQKRASGSAKSSSPAVNGSVFSGNEASPSSRA 161
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 31.1 bits (67), Expect = 0.10
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 93 KEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN-GDAEESNDAS 269
++V ++TS EPK + KSP +K + ++ T++ DS +N ++S DA
Sbjct: 973 EQVDSAQLTS-EPKSESLPKSPEEKSDDTSNDVTTENTNDINGDSNMDNVATVDKSTDAV 1031
Query: 270 ENGDAT 287
+ AT
Sbjct: 1032 DTSTAT 1037
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 30.3 bits (65), Expect = 0.18
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 171 EAAESNGKENGTDEAPEDSPAENGDAEESNDASENGD 281
E++E + ++N TDEA ED+ + D + S + D
Sbjct: 355 ESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSHSD 391
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 30.3 bits (65), Expect = 0.18
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 132 KESPVKKSPAK-KVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGV 308
K PV++ P K + ++ NG+E T + E++ + G ++E N+A+ + + GV
Sbjct: 123 KARPVQEQPIKDRKKSKNKNGEEPETSTSVENAESAKGSSDE-NEANTATAPSSNEANGV 181
Query: 309 KRK 317
+K
Sbjct: 182 DKK 184
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.9 bits (64), Expect = 0.24
Identities = 22/76 (28%), Positives = 28/76 (36%)
Frame = +3
Query: 96 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASEN 275
E +P S + + K K + E KE EA EE A N
Sbjct: 374 ESSPATSISVDEPQKDSKDDSEKVEKETEVERKEENEAEAEAVFDDWEAALEEPEVAENN 433
Query: 276 GDATEKKETGVKRKSV 323
TEKKET +K +V
Sbjct: 434 EVVTEKKETDIKSDAV 449
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 29.5 bits (63), Expect = 0.32
Identities = 17/60 (28%), Positives = 34/60 (56%)
Frame = +3
Query: 114 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEK 293
V ++E ES + S ++ E ES +DE+ +S +E+ ++EE +++ E D +E+
Sbjct: 75 VAASEDSESDSESS--EEEEETESEEDSEVSDESESESESES-ESEEESESEEESDESER 131
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 29.5 bits (63), Expect = 0.32
Identities = 12/56 (21%), Positives = 27/56 (48%)
Frame = +3
Query: 114 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGD 281
+ +EP + K+ K + +E+ + G D+ E+ ++ D +E D E+ +
Sbjct: 169 IQPSEPHDVDTSKNGLSKKQHSEAQPEVQGNDDEVEEEDDDDDDEDEDEDEDEDNN 224
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 29.5 bits (63), Expect = 0.32
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +3
Query: 108 EEVTSTEPKESPVKKSPAKKVEA--AESNGKENGTDEAPEDSPAENGDAEESNDASENGD 281
+E + KES K++PA+K + A NG E G A + D EE N D
Sbjct: 53 DETAAPSEKESLEKQAPARKTKGKRATENGTEEGKKPAKRTRKRKE-DGEEGGKRKRNQD 111
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.1 bits (62), Expect = 0.42
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 96 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEE 254
++ PE+ + + PVKK P+KK + A++N E DE + E D+E+
Sbjct: 58 DLKPED-DEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVEEEEEE-DSEK 108
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 28.7 bits (61), Expect = 0.56
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 150 KSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKR 314
K P+ K + S+ +NG+D DS + N SN +EN +A ++K + R
Sbjct: 963 KDPSPKSASESSSFYQNGSDIDDNDSNSSN----TSNHTTENANAQQRKLEDLNR 1013
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 28.7 bits (61), Expect = 0.56
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +3
Query: 111 EVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENG 278
EV++ EP+ PVK+ V ++ G+ + TD +P E + S + E G
Sbjct: 389 EVSANEPQPRPVKED----VPKSQVGGETDTTDVINNSTPKEETEESPSTELPETG 440
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 28.7 bits (61), Expect = 0.56
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +3
Query: 120 STEPKESPVKKSPAKKVE-----AAESNGKENGTDEAPEDSPAENGDAEESNDASENGDA 284
S P++SPV+ V+ +ESN K +GT+ + +P NG+ EE N+ G
Sbjct: 175 SFAPQKSPVENETETNVDNGDTKISESNEK-SGTEVEQQSAPNSNGN-EEVNNLEPVGQN 232
Query: 285 TEKKE 299
K+E
Sbjct: 233 ESKQE 237
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 28.3 bits (60), Expect = 0.73
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 177 AESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 329
+ES ++ DE E+ EN D + D +EN + + E G S A+
Sbjct: 241 SESYERDEDVDEEEEEDDDENNDEGDDEDENENDEL--RSENGSPNPSAAV 289
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 28.3 bits (60), Expect = 0.73
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 192 KENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 329
+EN +D E+S + AE A E TE++E K++ + L
Sbjct: 625 EENSSDNEMEESSGSSVTAENEESADEVDFQTEREENARKKEELRL 670
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/69 (23%), Positives = 35/69 (50%)
Frame = +3
Query: 126 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETG 305
E +S + S + +A S+ +E ++E ED+ E+G +E + E+G+ ++ E
Sbjct: 939 EGDDSVEEVSEYEASDADPSDEEEEESEEYSEDASEEDGYSESEVEDEESGEDWDELERK 998
Query: 306 VKRKSVALD 332
+++ D
Sbjct: 999 ARQEDAKHD 1007
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 168 VEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKE 299
VE + NG + + ++ +DS ++ + ESND S + DA + +
Sbjct: 372 VEEIKKNGIQEDS-QSTDDSSKDDDNNSESNDMSPHNDAETRAD 414
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +3
Query: 114 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASE---NGDA 284
+ ++ K SPV + A +N + + +SP + EE+N A + A
Sbjct: 527 LANSNSKSSPVAVQRVSTLPQASANKQAKEMESKMSNSPTQKSKTEENNQAVRAILDASA 586
Query: 285 TEKKETGVKR 314
T +K+ + R
Sbjct: 587 TMEKQYDLHR 596
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 99 VAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN 260
VAP +TS + V KS VE+ +++ T PED P+ ++N
Sbjct: 288 VAPSFITSDQAATPDVLKSEEAHVESFSKESEKDQT-PIPEDVPSPMDTLSQAN 340
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +3
Query: 78 AAVDKKEVAPEEVTSTEPKESPV----KKSPAKKVEAAESNGKENGTDEAPEDSPAENGD 245
A VD++E+ EE + PV K S +K S K + EDS GD
Sbjct: 75 AQVDEEELEEEEEEEEDATPEPVVTSKKNSRSKPKNGGASKRKASRRTVVDEDSENLEGD 134
Query: 246 AEESN 260
E+ +
Sbjct: 135 EEDGS 139
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 210 EAPEDSPAENGDAEESNDASENGDATEK 293
E PEDS E+G +E + D SE+G+ E+
Sbjct: 235 EPPEDS--EDGISEMNEDPSESGEMIEQ 260
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 3.9
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Frame = +3
Query: 132 KESPVKKSPAKKVEAAESNGKENG-------TDEAPEDSPAENGDAEESNDA-SENGDAT 287
K +PV A VE AE NG E+ + E ED A+ + +A E +
Sbjct: 403 KPAPVVAPAAPTVE-AEVNGVEDSKKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKK 461
Query: 288 EKKETGVKRK 317
EKKE K+K
Sbjct: 462 EKKEKKEKKK 471
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 3.9
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +3
Query: 129 PKES-PVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG-DAEESNDASENGDAT-EKKE 299
PK S P +PA V A +S NG E+ ENG D SND+ +G E+ E
Sbjct: 396 PKSSFPTSSTPAS-VGAEKSEETSNGNKSEQEEK--ENGNDETRSNDSLVSGKGKGEENE 452
Query: 300 TGV 308
V
Sbjct: 453 DSV 455
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 3.9
Identities = 20/86 (23%), Positives = 35/86 (40%)
Frame = +3
Query: 66 TMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGD 245
T A+ ++D S++P E+P S K + E++ K+ +E + AE
Sbjct: 333 TEAEQSIDVSSDIGLRSDSSKPNEAPT-SSENIKADQPENSTKQENPEEDMQIKDAEEHS 391
Query: 246 AEESNDASENGDATEKKETGVKRKSV 323
ES A++ E K S+
Sbjct: 392 NLESTPAAQQTSEVEANNHQEKPSSL 417
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Frame = +3
Query: 108 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE----NGDAEESNDASE 272
EEV +K+ A + KEN D+ P + AE NG EE SE
Sbjct: 501 EEVEKNNANSENANGLTDEKIIEAPLDTKENSDDDKPSPAAAEDIGTNGAIEEIPQVSE 559
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 81 AVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPED 224
++D+ +P ++S K SP K+ +K ++A + TDE P D
Sbjct: 592 SLDENVNSPTSISSPSSKSSPFTKTTSKDTKSATT------TDERPSD 633
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 5.2
Identities = 21/73 (28%), Positives = 30/73 (41%)
Frame = +3
Query: 102 APEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGD 281
A EE + SP + S K + E + ENG + +N D E DA NG
Sbjct: 144 ADEEGSEISVPSSPKRMSFNLKEDMEEGDFDENG------NFIRKNYDPESQYDAWLNGS 197
Query: 282 ATEKKETGVKRKS 320
+ KK R++
Sbjct: 198 VSNKKSIAAAREA 210
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 132 KESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN 260
+E +S + EA E NG + S EN D+EE N
Sbjct: 3939 EEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEEN 3981
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 225 SPAENGDAEESNDASENGDAT 287
SP NGD E +ENG+ T
Sbjct: 9 SPTTNGDKNEDGYPAENGEGT 29
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = +3
Query: 105 PEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE---NGDAEESND-ASE 272
P E +TE + + +S + ++ S + D DSP + N + +D SE
Sbjct: 351 PSENDTTESENDTLSESSTTSISSSPSENSDTSDDLTKVDSPNKSLVNDNVSAKHDKESE 410
Query: 273 NG 278
NG
Sbjct: 411 NG 412
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 25.4 bits (53), Expect = 5.2
Identities = 20/79 (25%), Positives = 40/79 (50%)
Frame = +3
Query: 90 KKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDAS 269
+KEV + T E ++S + A+K EA+ + +E + +++ ++ EES+ S
Sbjct: 522 QKEVKEKRNTRREKRKSKKEFLKAQKNEASNNLKQEIVSKAGAQETENDDLIDEESDALS 581
Query: 270 ENGDATEKKETGVKRKSVA 326
E + + + KRK+ A
Sbjct: 582 ELEEDYRQLKKSKKRKNQA 600
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 132 KESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESND 263
KE ++ AKK+ ES K+ A + + + A+E ND
Sbjct: 41 KEKAKARAEAKKLAKKESKAKQESKVAAYDTGNSSDNIADEEND 84
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 219 EDSPAENGDAEESNDASENGDATEKKETGVKRKS 320
E+ E+ E NDA+E G + +K+ K+KS
Sbjct: 22 ENDVVEDDGKVEENDAAEEGASNGEKKKKKKKKS 55
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 144 VKKSPAKKVEAAESNGKE--NGTDEAPEDSPAENGDAEESNDASENGDATEKKETG 305
++K+ AKK E G DE P + + G+A + N+ E + KK+ G
Sbjct: 103 LEKAYAKKYAPIFKRRSEVVRGADE-PTEEEIKKGEAADENEKKEPTSSESKKQEG 157
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +3
Query: 153 SPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVALD 332
+P K+ E AE+ +D + DAEE S+ G T KKE +++ AL+
Sbjct: 3 NPKKRAEKAEA------AKSRKQDEEKKKKDAEEDEKWSK-GVKTNKKEQEAEKRKAALE 55
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 126 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 239
E +ESP+K P KK + E T + SP E+
Sbjct: 892 ETRESPMKNKPTKKQHKRAFSMFERPTSQKAPLSPVES 929
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 75 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPA 233
+ A KK A E + + + K++ AK++EAA+ N + P+D+PA
Sbjct: 80 EQAAKKKAKAAEAEAAAAARAAAAKEAEAKRLEAAK-----NIVLKEPKDAPA 127
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 63 ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGK 194
A A A + + +V+ + + +PK++PV S A + S+ K
Sbjct: 210 AESAAAVIKEDKVSDRKKSKKKPKKTPVSNSTASQASENASDKK 253
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/62 (22%), Positives = 22/62 (35%)
Frame = +3
Query: 114 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEK 293
+ P +P + SP KK E + T+E P E A + + + T
Sbjct: 68 IVENVPVWNPNRTSPVKKEETEDLPSFNGDTEEKPFIKTEEGAPASSQSQVVVSSNLTSN 127
Query: 294 KE 299
E
Sbjct: 128 SE 129
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/57 (21%), Positives = 30/57 (52%)
Frame = +3
Query: 69 MADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 239
+A+ + +AP + ++ + + VK A+ +E + K+NGT+ + ++ E+
Sbjct: 1273 VAEGLLPASAIAPPKSSNEKKSSNNVKAVEAETKSKSEKSPKKNGTNISDANNKNES 1329
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 24.6 bits (51), Expect = 9.0
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 17/83 (20%)
Frame = +3
Query: 105 PEEVTSTEPKESPVKKSPA---KKVEAAESN-----------GKEN---GTDEAPEDSPA 233
P ++ S+ PK+ V++SPA + + A + N G++N T P S
Sbjct: 188 PSKIPSSTPKDDNVQESPAFPDENITALQKNVANFTSIKDSGGRDNLYIQTISKPRRSYV 247
Query: 234 ENGDAEESNDASENGDATEKKET 302
+N +E++ S+ E+K+T
Sbjct: 248 QNNKSEQTIKPSKQNKQKEEKKT 270
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/76 (21%), Positives = 32/76 (42%)
Frame = +3
Query: 81 AVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN 260
++D + P+ + + KS ESNGK NG D+ + +++G + +
Sbjct: 33 SLDGMSIMPQRDGNLQIPNFVKPKSTFATSNIGESNGKRNG-DKVRGNRRSKSGHSSYAG 91
Query: 261 DASENGDATEKKETGV 308
G++ +GV
Sbjct: 92 SRISGGNSNSHLPSGV 107
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 219 EDSPAE-NGDAEESNDASENGDATEKKETGVKRKSVALD 332
ED+ A+ E+SN A+ NG+ T GV + S +D
Sbjct: 41 EDARADLQSSMEDSNKANGNGEETTDGAEGVLQTSEEVD 79
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 105 PEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPED 224
PEE + KE ++SP+K +E E + + +E P D
Sbjct: 34 PEEQEKKDEKEDDKEESPSKSLE--EISQSVSPVEEEPRD 71
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +3
Query: 51 LIYLATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKEN 200
L YL +A+ + D P + K+SPV +SP K+ ++++ + ++
Sbjct: 66 LKYLRGLAEES-DPNLKLPSFLAPPNDKDSPVNQSPWKRSDSSKRSSSQD 114
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 75 DAAVDKKEVAPEEVTSTEPKESPVKKSP 158
D + K P+ V STEP V+KSP
Sbjct: 310 DLLEEFKLFLPDNVDSTEPSTPNVQKSP 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,720,065
Number of Sequences: 5004
Number of extensions: 28486
Number of successful extensions: 217
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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