Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305C08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 35 0.046
11_03_0112 - 10135052-10135168,10135712-10135795,10135879-101359... 31 0.56
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931 31 0.56
06_01_0172 + 1362101-1363708 30 1.3
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832... 29 1.7
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289... 29 1.7
12_02_0259 + 16527788-16527842,16528014-16528381 28 4.0
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 28 5.2
04_04_1230 + 31929261-31929386,31929497-31929643,31929974-319300... 28 5.2
11_06_0204 + 21191611-21192807 27 6.9
01_05_0623 - 23768426-23768794 27 6.9
11_02_0015 - 7355989-7357092 27 9.1
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 34.7 bits (76), Expect = 0.046
Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 11/128 (8%)
Frame = +2
Query: 80 QYQFFPVSSGSVQFKVRAANDAHIALTTGPQESDPMYEVMIGGWGNAKSVIRKNRTKPDK 259
+++F G + F+ A ND + L Q Y + + ++ +R K K
Sbjct: 22 EFRFRETGRGCITFEASAHND--VTLVFREQPGSQHYHYKMDNSRHYIVILGSHRNKRLK 79
Query: 260 VEIESP--------GILNGGEYRGFWVRWDSGIIS--AGREGEAIPFISWSDPEP-FPVY 406
+E++ G+ ++ +W+ G+IS GR W DP+P V
Sbjct: 80 IEVDGKTVVDVAGIGLCCSSSFQSYWISIYDGLISIGQGRHPNNNILFQWLDPDPNRNVQ 139
Query: 407 YVGVCTGW 430
YVG+ + W
Sbjct: 140 YVGL-SSW 146
>11_03_0112 -
10135052-10135168,10135712-10135795,10135879-10135953,
10137801-10137978,10138048-10138212,10138291-10138337,
10140233-10140301,10140531-10140629,10141256-10141375,
10141459-10141581,10149251-10149364,10150725-10150913,
10151058-10151110,10151365-10151470,10151957-10152085
Length = 555
Score = 31.1 bits (67), Expect = 0.56
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = -2
Query: 508 ARGCCVQCSCYRCSRWHFDFPGACGTPACADSDVVNWERFRIRPGYEWNSFTLASSGDNA 329
AR CC + RC W + G G + DV + + YE SF A SG N+
Sbjct: 37 ARDCCAKPK-KRCVDWIGEGGGLGGMEEYIEEDVGTCSAWNLEANYEVVSFIYAFSGINS 95
Query: 328 A 326
A
Sbjct: 96 A 96
>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
Length = 246
Score = 31.1 bits (67), Expect = 0.56
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 284 LNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEP 394
L G +R WV W +I AG G F+ PEP
Sbjct: 195 LVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231
>06_01_0172 + 1362101-1363708
Length = 535
Score = 29.9 bits (64), Expect = 1.3
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +3
Query: 201 LEAGETLRASSGKIEPSPIRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHSYPG 380
L + LR ++ +P +L + P L NI++ G VGI LDA +K+ PG
Sbjct: 167 LVSARRLRLAAALFRAAPTKLYI-TPN-LVSCNILLKGLVGIG---DLDAALKVLDEMPG 221
Query: 381 L--IRNLSQFTTSESAQAGVPQAPGKSK 458
L ++ +TT SA G G K
Sbjct: 222 LGITPDVVTYTTVLSAYCGKGDIEGAQK 249
>03_06_0417 -
33782577-33782687,33782996-33783052,33783110-33783205,
33783252-33783284,33783543-33783599,33783968-33784060,
33784308-33784395,33784812-33784835,33784956-33785164
Length = 255
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 297 NIVVFGFVGIAALSPLDARVKLFHSY-PGLIRNLSQFTTSESAQAGVPQAPGKSKCHRL 470
N VVF V I ++ +++LF P N QF T E ++G+PQ + HR+
Sbjct: 36 NPVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGCQFHRV 94
>01_06_0837 -
32328191-32328369,32328682-32328731,32328844-32328923,
32329193-32329345,32329505-32329654,32329877-32330000,
32330086-32330198,32330287-32330420,32330566-32331232
Length = 549
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +2
Query: 272 SPGILNGGEYRGF---WVRWDSGIISAGREGEAIPFISWSDPEPFPVYY 409
SP +L GG Y G W+R I+ G + P + + D P ++Y
Sbjct: 211 SPVVLFGGSYGGMLAAWMRLKYPHIAVGALASSAPILQFEDVVPSTIFY 259
>12_02_0259 + 16527788-16527842,16528014-16528381
Length = 140
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -2
Query: 370 EWNSFTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFPDDALSVS 212
E +S +A+ G +A+P PK +F + + L+G G P++ SV+
Sbjct: 68 EVSSVVVAAPGFRSAVPVEPK--LFRRIAGGEEKGYYLVGDGEAIPNNGSSVT 118
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = -3
Query: 381 DQDMNGIASPSRPAEIMPLS-QR----TQKPRYSPPLRIP 277
D+ + SP+ PA P S QR Q PRY PPLR P
Sbjct: 324 DRAASPARSPASPARRGPQSPQRRVSPAQSPRYQPPLRKP 363
>04_04_1230 +
31929261-31929386,31929497-31929643,31929974-31930065,
31930159-31930255,31930533-31930576,31930708-31930796,
31931083-31931174,31931266-31931412,31931539-31931644,
31931736-31931812,31932281-31932352,31932738-31932865,
31932947-31933142,31933206-31933407,31933642-31933691
Length = 554
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 277 GAFNFNLIGLGSIFPDDALSVSPASNHHLIHRIRFLRAC 161
G++NF+L L + D A + PAS+ L+ +R R C
Sbjct: 11 GSYNFHLRSLSAASRDSAAAADPASDPILLESVR--RVC 47
>11_06_0204 + 21191611-21192807
Length = 398
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 176 SDPMYEVMIGGWGNAKSVIRKNRTKPDKVEIESPGILNG 292
S +Y G WG+A ++ R++ D V++ PG+ G
Sbjct: 195 SAAIYSSETGAWGDAIALEREHPDPDDAVKVGKPGVQVG 233
>01_05_0623 - 23768426-23768794
Length = 122
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 143 AHIALTTGPQESDPMYEVMIGGWGNAKSVIRKNRTKP 253
A + T + S P + + GWGN S + + RT P
Sbjct: 32 AELGDDTSTKRSSPAWGGELVGWGNMSSPVWERRTSP 68
>11_02_0015 - 7355989-7357092
Length = 367
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 255 IRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHS 371
+RL LKA ++ T+ G + ALS LD RV F S
Sbjct: 25 MRLSLKAVDWATDATRRADGTLNRLALSVLDPRVPAFSS 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,584,667
Number of Sequences: 37544
Number of extensions: 340882
Number of successful extensions: 1079
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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