Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305C08f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17) 31 0.58
SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2) 30 1.3
SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_27051| Best HMM Match : DUF827 (HMM E-Value=1.8) 29 3.1
SB_48424| Best HMM Match : PSI (HMM E-Value=0.4) 29 3.1
SB_4370| Best HMM Match : PSI (HMM E-Value=0.4) 29 3.1
SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7) 28 4.1
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 28 5.4
SB_933| Best HMM Match : ExoD (HMM E-Value=6) 28 5.4
SB_45939| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00051) 27 7.1
SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44) 27 7.1
SB_36923| Best HMM Match : FlaC_arch (HMM E-Value=0.34) 27 7.1
SB_1743| Best HMM Match : DUF563 (HMM E-Value=3.7) 27 7.1
SB_16514| Best HMM Match : Paxillin (HMM E-Value=3.7) 27 9.4
SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05) 27 9.4
>SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)
Length = 415
Score = 31.1 bits (67), Expect = 0.58
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -2
Query: 247 GSIFPDDALSVSPASNHHL-IHRIRFLRACRERDVGIIRCSDFEL 116
GSIF D VS NH L + R + L C+ER++G D EL
Sbjct: 303 GSIFHDKTFIVSDLRNHVLRVFRQKGLTICKERNIGQRGGKDGEL 347
>SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)
Length = 878
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 170 QESDPMYEVMIGGWGNAKSVIRKN-RTKPDKVEIESPGILNGG 295
Q+ D MYEV+I + +RK+ R+ D E E PGI+ GG
Sbjct: 766 QQQDQMYEVLI------HNALRKSFRSDEDDDENEEPGIIRGG 802
>SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1079
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 487 CSCYRCSRWHFDFPGACGTPACADSDVVNWERFRIRPGYEW 365
C C R + FD GAC T C + + + E F + PGY W
Sbjct: 346 CFC-RKNHHRFDRFGACFT--CPNGMICSNETFTLAPGYYW 383
>SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 164 GPQESDPMYEVMIGGWGNAKSVIRKNRT-KPDKVEIESPGILNGGEY 301
GP + + +G W S R +T P KV + PGI NG Y
Sbjct: 84 GPTQDCDVNSGEVGPWKEVPSCSRVGQTGDPSKVRVYGPGIENGLRY 130
>SB_27051| Best HMM Match : DUF827 (HMM E-Value=1.8)
Length = 283
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Frame = +2
Query: 104 SGSVQFKVRAANDAHIALTTGPQESDPMYEVMI-------GGWGNAKSVIRKNRTKPDKV 262
SGSV + V A +H L + + P+Y + + G V+R +P+K
Sbjct: 84 SGSVNYFVAPAESSHSQLVLIEELNQPIYSLTLKIIICLSETTGTLPLVLRNALPRPEKY 143
Query: 263 EIESPGILNG 292
SPG L G
Sbjct: 144 PENSPGTLTG 153
>SB_48424| Best HMM Match : PSI (HMM E-Value=0.4)
Length = 175
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Frame = -2
Query: 502 GCCVQCSCY-RCSRW 461
GCC+ C C RCS+W
Sbjct: 104 GCCIYCCCCRRCSKW 118
>SB_4370| Best HMM Match : PSI (HMM E-Value=0.4)
Length = 175
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Frame = -2
Query: 502 GCCVQCSCY-RCSRW 461
GCC+ C C RCS+W
Sbjct: 104 GCCIYCCCCRRCSKW 118
>SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)
Length = 225
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 260 VEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPV-YYV 412
+ I + GI + + FWV + S + G I W+DP+P V YY+
Sbjct: 1 LNIATSGITSAEKRMVFWVDFRSANLVLGSGATVIA--QWTDPDPLEVGYYI 50
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = +1
Query: 427 LGCHRLLENRSATDCTCSSCIV--RSTPWLPW 516
LGC RL + +C S C V + TPW W
Sbjct: 994 LGCERLGKPLEVVECFNSECPVHGKYTPWTGW 1025
>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
Length = 555
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 252 PIRLKLKAPEFLTEGNIVVFGFVG-IAALSPLDARVKLFHSYPG 380
P ++ K P L +G I+ GF+G ++AL ++LF G
Sbjct: 100 PYVIRPKGPRLLRQGTIMKAGFIGLVSALGVYACNLELFRRCAG 143
>SB_45939| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00051)
Length = 575
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = +2
Query: 191 EVMIGGWGNAKSVIRKNRTKPDKVEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPF 370
+ + G +AKS+ + +P+K +IES LN + + +I AG + +A P
Sbjct: 247 QCQLAGTRSAKSIYFGSYYRPNKSDIESLDELNSSLLKMGTTLHKNNVILAG-DFDA-PD 304
Query: 371 ISWSDPE 391
I W +PE
Sbjct: 305 IDWVNPE 311
>SB_2980| Best HMM Match : DUF814 (HMM E-Value=2.10195e-44)
Length = 950
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 212 GNAKSVIRKNRTKPDKVEIESPGILNGGEYRGFWVR 319
GNA VI P+ +E E PG L + R W R
Sbjct: 784 GNAADVIDGAGAPPEGLEQEEPGPLRTAQSREAWTR 819
>SB_36923| Best HMM Match : FlaC_arch (HMM E-Value=0.34)
Length = 240
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 323 DSGIISAGREGEAIPFISWSDPEPFPVYYVGVCTG 427
D G + G E I F+ WS + F VCTG
Sbjct: 200 DKGNVKMGNELSDISFVLWSVEQEFASNAGAVCTG 234
>SB_1743| Best HMM Match : DUF563 (HMM E-Value=3.7)
Length = 249
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 244 SIFPDDALSVSPASNHHLIHRIRFLRAC 161
S+ P+ A+S++ S HH R FLR C
Sbjct: 154 SLHPEVAMSLATYSLHHFTQRRFFLRRC 181
>SB_16514| Best HMM Match : Paxillin (HMM E-Value=3.7)
Length = 311
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 197 MIGGWGNAKSVIRKNRTKPDKVEIESPGILNGGE 298
++GG GN ++ R + T P+ V E P L G+
Sbjct: 125 LMGGNGNTGALTRTSNTNPNMVFEEKPAYLADGD 158
>SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05)
Length = 385
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -2
Query: 424 CADSDVVNWERFRIRPGYEWNSFTLASSGDNA 329
C DSD+ + R+ ++W + +++ + DNA
Sbjct: 318 CGDSDICPEDSSRVMAEFKWRNMSVSLNKDNA 349
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,282,747
Number of Sequences: 59808
Number of extensions: 362986
Number of successful extensions: 1131
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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