Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305C07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.05 |sui1|psu1|translation initiation factor eIF1|Schizo... 131 5e-32
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 35 0.008
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 28 0.73
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.2
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 25 5.2
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 25 6.8
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 25 9.0
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 9.0
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 25 9.0
>SPBC23G7.05 |sui1|psu1|translation initiation factor
eIF1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 109
Score = 131 bits (317), Expect = 5e-32
Identities = 62/110 (56%), Positives = 84/110 (76%), Gaps = 1/110 (0%)
Frame = +1
Query: 130 SIQNLNTFDPFADAIKSSEDDVQD-GLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 306
+IQN NT DPFAD + +DD Q +H+RIQQRNGRKTLTTVQGL E+D K+I+RA
Sbjct: 3 AIQNFNTVDPFAD---TGDDDAQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRAL 59
Query: 307 KKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 456
KK+FACNGT+V+ + GEV+QLQGDQR + ++LT+ ++ + +K+HGF
Sbjct: 60 KKDFACNGTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 34.7 bits (76), Expect = 0.008
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 208 VHVRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQ 384
V ++ +R RK +TTVQGL + + KK + +FA +V + + + + +QGD
Sbjct: 99 VLIKTIERTKRKRVTTVQGLDAFGIETKKAAKMLANKFATGASVTKTADKKDEIVVQGDL 158
Query: 385 RENICQWLTKSGLVKPE 435
+I ++ + PE
Sbjct: 159 NYDIFDFILEKFKEVPE 175
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 28.3 bits (60), Expect = 0.73
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -3
Query: 189 VLRAFDSIGEWVECVEILDGHTIERRVSLFQR 94
+LR S+ W+ ++ +G T+E+RV LF+R
Sbjct: 25 LLRDPYSLKSWLRYIKTHEGSTLEKRVLLFER 56
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/60 (21%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Frame = -3
Query: 201 ILNVVLRAFDSIGEWVEC---VEILDGHT-IERRVSLFQRNAAILRTQQYILSLITRCYV 34
IL ++L + E+++ VE+ G + ++ +S +Q+N +I+ Y++ +++ C++
Sbjct: 478 ILGLLLGLVEESHEFIQTITHVEVSFGASALDVLISFYQKNESIVEISGYVVMILSHCFL 537
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +1
Query: 91 VSLKQRDPTFNRMSIQNLNTFDPFAD-AIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGL 267
V + P S++ L D AI D + + H R+Q +N R T QG+
Sbjct: 50 VEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGI 109
Query: 268 SS 273
S
Sbjct: 110 ES 111
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 486 GHVMF*QGGLETVHLELFRLH*AGFGEP 403
GH M G TV L+L ++H GF +P
Sbjct: 268 GHKMVMSIGGSTVDLDLVQIHPTGFVDP 295
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 24.6 bits (51), Expect = 9.0
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +3
Query: 129 VHPESQHIRPIRRCYQKL 182
+HP + + +RRC+Q+L
Sbjct: 1969 IHPLKRKVAQVRRCFQEL 1986
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 84 SQRFVETKRPYVQSYVHPESQHIRPIRRC 170
S+ V+ P VQSY PE +R C
Sbjct: 132 SETTVQDYNPQVQSYCRPEPLSSNHVRSC 160
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Frame = +1
Query: 250 TTVQGLSSEYDL----KKIVRACKKEFACN 327
+T+ GL++ Y + K V+AC K F CN
Sbjct: 122 STLSGLAASYVILGLQSKNVQACIKHFVCN 151
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,114,163
Number of Sequences: 5004
Number of extensions: 42736
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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