Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305C05f
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   125   3e-30
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   0.96 
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   1.3  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   1.3  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    24   9.0  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  125 bits (301), Expect = 3e-30
 Identities = 62/110 (56%), Positives = 85/110 (77%), Gaps = 2/110 (1%)
 Frame = +1

Query: 13  ISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVPMPKLKAFQKIQIRLVR 186
           ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP P LKAF K Q RL R
Sbjct: 22  VAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVPQPLLKAFHKCQARLTR 81

Query: 187 ELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 336
           ELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V++AILE
Sbjct: 82  ELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAVHNAILE 129


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -1

Query: 257 LGLGRILRSPTKTTCLPLNFFSSSRTS 177
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +2

Query: 230  ETVRSCLSPATKPVLLTNKRGHAQ 301
            E+ +  ++ +TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +1

Query: 127 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 219
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
 Frame = +1

Query: 85  KAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLV-RELEKKF-SGKHVVFVGDRKILPKPS 258
           + K+ E   KK   +      L   QK Q  L  R L++   SG  V  + + +   KP 
Sbjct: 293 RLKKKEKERKKKEEMKAQGKYLSKKQKEQQALAQRRLQQMLESGVRVAGLSNGEKKQKPV 352

Query: 259 HKTRVANKQKRPRSRTLTSVYDAILEGGPGTQFAL 363
           +     NK+K  RS T +     ILE  P T  ++
Sbjct: 353 Y----TNKKKSNRSGTSSISSSGILESSPATSISV 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,539,405
Number of Sequences: 5004
Number of extensions: 28939
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)