Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305C05f
         (374 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   0.22 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   2.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   6.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   8.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   8.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   8.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   8.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   8.3  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.4 bits (53), Expect = 0.22
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 7   TSISQALVELETNSDLKAQLRE 72
           T++S AL EL  N D++ +LRE
Sbjct: 311 TTMSNALYELALNQDVQKKLRE 332


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 16/78 (20%), Positives = 32/78 (41%)
 Frame = +1

Query: 100 ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVAN 279
           EL   KS +  +P+P  +    +      + +KK +G    F   +        + + + 
Sbjct: 552 ELKRLKSTVSLLPLPLARTPSVMSASSTCKKDKKNAGSGSRFTIYKANKASKKKREKSSA 611

Query: 280 KQKRPRSRTLTSVYDAIL 333
           K++R  ++TL  V    L
Sbjct: 612 KKERKATKTLAIVLGVFL 629


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 234 VSNKDYMFTTELLFELTD 181
           +SN   M  TELL ELT+
Sbjct: 2   LSNNSSMTQTELLQELTN 19


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 176 LIWIF*KAFSLGIGT*MMIDFLLCSSISLAFVM 78
           +IWIF  + SL   + M I  L    I +AF M
Sbjct: 78  VIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFEM 110


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 143 GIGT*MMIDFLLCSSISLAFVM*SSRSWALRSELVSSS 30
           G+ T +++  L+C SIS          W L  E +  S
Sbjct: 416 GLITGLIMRVLICGSISEEQKFDDEAHWELEEESLQGS 453


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -1

Query: 299 ERGLFCLLATRVLWLGLGRILRSPTKTTCLPLNF 198
           E  +  L    V +L    +L +PT  TC+   F
Sbjct: 552 ELTIILLAGVLVCYLNTFLLLATPTTVTCILQRF 585


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 176 LIWIF*KAFSLGIGT*MMIDFLLCSSISLAFVM 78
           +IWIF  + SL   + M I  L    I +AF M
Sbjct: 78  VIWIFSTSKSLRTPSNMFIVSLAIFDIIMAFEM 110


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -1

Query: 299 ERGLFCLLATRVLWLGLGRILRSPTKTTCLPLNF 198
           E  +  L    V +L    +L +PT  TC+   F
Sbjct: 642 ELTIILLAGVLVCYLNTFLLLATPTTVTCILQRF 675


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,785
Number of Sequences: 438
Number of extensions: 1893
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)