Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305C05f
(374 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 116 7e-27
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 116 7e-27
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 109 6e-25
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 101 2e-22
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 101 2e-22
At2g03140.1 68415.m00267 CAAX amino terminal protease family pro... 30 0.44
At1g65670.1 68414.m07452 cytochrome P450 family protein similar ... 28 2.3
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 28 2.3
At5g40640.1 68418.m04933 expressed protein 27 4.1
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 27 5.4
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 27 5.4
At1g27920.1 68414.m03421 microtubule associated protein (MAP65/A... 27 5.4
At1g48880.1 68414.m05476 hypothetical protein 26 7.1
At1g17000.1 68414.m02063 alpha, alpha-trehalose-phosphate syntha... 26 7.1
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 26 9.4
At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containi... 26 9.4
At1g47840.1 68414.m05325 hexokinase, putative similar to hexokin... 26 9.4
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 116 bits (278), Expect = 7e-27
Identities = 59/114 (51%), Positives = 87/114 (76%), Gaps = 2/114 (1%)
Frame = +1
Query: 1 FETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQI 174
FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP KAF+KI +
Sbjct: 19 FEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRLRKAFRKIHL 78
Query: 175 RLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 336
RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV++A+LE
Sbjct: 79 RLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLE 128
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 116 bits (278), Expect = 7e-27
Identities = 59/114 (51%), Positives = 87/114 (76%), Gaps = 2/114 (1%)
Frame = +1
Query: 1 FETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQI 174
FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP KAF+KI +
Sbjct: 19 FEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRLRKAFRKIHL 78
Query: 175 RLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 336
RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV++A+LE
Sbjct: 79 RLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLE 128
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 109 bits (262), Expect = 6e-25
Identities = 58/113 (51%), Positives = 83/113 (73%), Gaps = 2/113 (1%)
Frame = +1
Query: 4 ETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIR 177
E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP KAF+KI R
Sbjct: 20 EEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVPFRLRKAFRKIHPR 79
Query: 178 LVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 336
LVRELEKKFSGK V+FV R+I+ P V +RPR+RTLTSV++A+LE
Sbjct: 80 LVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEAMLE 128
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 101 bits (242), Expect = 2e-22
Identities = 52/113 (46%), Positives = 82/113 (72%), Gaps = 2/113 (1%)
Frame = +1
Query: 4 ETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMPKLKAFQKIQIR 177
+ ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP KA++KI +R
Sbjct: 20 DEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRLRKAYRKIHVR 79
Query: 178 LVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 336
LVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+
Sbjct: 80 LVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILD 128
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 101 bits (242), Expect = 2e-22
Identities = 52/113 (46%), Positives = 82/113 (72%), Gaps = 2/113 (1%)
Frame = +1
Query: 4 ETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMPKLKAFQKIQIR 177
+ ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP KA++KI +R
Sbjct: 20 DEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRLRKAYRKIHVR 79
Query: 178 LVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 336
LVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+
Sbjct: 80 LVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILD 128
>At2g03140.1 68415.m00267 CAAX amino terminal protease family protein
very low similarity to SP|Q40863 Late embryogenesis
abundant protein EMB8 from Picea glauca; contains Pfam
profile PF02517 CAAX amino terminal protease family
protein
Length = 1805
Score = 30.3 bits (65), Expect = 0.44
Identities = 27/82 (32%), Positives = 37/82 (45%)
Frame = -1
Query: 356 NWVPGPPSRIASYTEVNVLERGLFCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTS 177
NW PSR+A V L +F L+ +LW R +P K L L +S
Sbjct: 1549 NWSTSNPSRVAELASVVGLYVAVFILV---MLWGKRVRKYENPFKQYGLDL---KASNKE 1602
Query: 176 LIWIF*KAFSLGIGT*MMIDFL 111
I F KAF+ GI ++I F+
Sbjct: 1603 KIQEFLKAFAGGITVVLLIQFI 1624
>At1g65670.1 68414.m07452 cytochrome P450 family protein similar to
Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana]
Length = 482
Score = 27.9 bits (59), Expect = 2.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 300 KDIDLCVRCYPRGGARYPI 356
K++ LC RC+P G R+P+
Sbjct: 195 KELALCWRCFPSGWFRFPL 213
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 27.9 bits (59), Expect = 2.3
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +1
Query: 100 ELHNKKSIIIY--VPMPKLKAFQKIQIRLVREL-----EKKFSGKHVVFVGD-RKILP 249
EL + ++II+ PM F+ + R +R++ +K F GK +VF GD R++LP
Sbjct: 640 ELVKEANLIIWDETPMMSKHCFESLD-RTLRDIMNNPGDKPFGGKGIVFGGDFRQVLP 696
>At5g40640.1 68418.m04933 expressed protein
Length = 586
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +1
Query: 157 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYD 324
F++ + LV++L KH F G + +P+P QK + +T ++ D
Sbjct: 517 FRRHFVELVKKLSNDLDNKHNRFEGGSRSVPRPGKTVSRIFSQKSFKKKTSSNGSD 572
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 285 KEATLKDIDLCVRCYPRG 338
+E++LK CVRCYP G
Sbjct: 181 RESSLKYQTRCVRCYPNG 198
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 285 KEATLKDIDLCVRCYPRG 338
+E++LK CVRCYP G
Sbjct: 180 RESSLKYQTRCVRCYPNG 197
>At1g27920.1 68414.m03421 microtubule associated protein
(MAP65/ASE1) family protein low similarity to protein
regulating cytokinesis 1 (PRC1) [Homo sapiens]
GI:2865521; contains Pfam profile PF03999: Microtubule
associated protein (MAP65/ASE1 family)
Length = 592
Score = 26.6 bits (56), Expect = 5.4
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 13 ISQALVELETNSDLKA-QLRELYITKAKEIE 102
I QA E++ LKA +++EL+I K KE+E
Sbjct: 333 IQQAEAEVKRLDQLKASRIKELFIKKQKELE 363
>At1g48880.1 68414.m05476 hypothetical protein
Length = 485
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 181 VRELEKKFSGKHVVFVGD 234
VR++ K+ GK +VFVGD
Sbjct: 172 VRDVLKRLRGKRIVFVGD 189
>At1g17000.1 68414.m02063 alpha, alpha-trehalose-phosphate synthase,
UDP-forming, putative / trehalose-6-phosphate synthase,
putative / UDP-glucose-glucosephosphate
glucosyltransferase, putative similar to
trehalose-6-phosphate synthase SL-TPS/P [Selaginella
lepidophylla] GI:4100325, GI:4468259 from (Pichia
angusta); contains Pfam profiles PF00982:
Glycosyltransferase family 20, PF02358:
Trehalose-phosphatase
Length = 730
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -1
Query: 260 WL-GLGRILRSPTKTTCLPLNFFSSSRTSLIW 168
W+ GL + + T T P +FF +S+TSL+W
Sbjct: 527 WVDGLKNVFKYFTDRT--PRSFFEASKTSLVW 556
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 25.8 bits (54), Expect = 9.4
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = +1
Query: 151 KAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAI 330
K Q+I+ L L S + + +L SHK R++ ++KR T D I
Sbjct: 7 KLKQRIRQDLAESLSVSVSETNPQSQSLKLLLDSSSHKPRLSKREKRRNCETFAREDDEI 66
Query: 331 LEGGPG 348
E G
Sbjct: 67 RENEVG 72
>At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containing
protein similar to RNA binding protein PufA GB:AAD39751
[Dictyostelium discoideum] and similar to Pumilio
protein GB:A46221 [Drosophila sp.]
Length = 1003
Score = 25.8 bits (54), Expect = 9.4
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +1
Query: 43 NSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQK 165
N +Q++E ++ ++EL N+ ++ Y+P KA ++
Sbjct: 358 NMSEMSQVKENHMQSQLQVELENQSDVMRYIPNGHKKALRQ 398
>At1g47840.1 68414.m05325 hexokinase, putative similar to hexokinase
1 [Arabidopsis thaliana] Swiss-Prot:Q42525
Length = 493
Score = 25.8 bits (54), Expect = 9.4
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Frame = +2
Query: 44 TPTSKPNFGSFTLQKLKKLNY----TIRSRSSSMCRCL 145
+P P GSFT + NY +RS S+S C L
Sbjct: 7 SPVVTPALGSFTFSSRPRSNYIVMSAVRSNSASTCPIL 44
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,334,039
Number of Sequences: 28952
Number of extensions: 159565
Number of successful extensions: 484
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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