Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305C04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0133 - 26793335-26793380,26793696-26793907,26794009-267941...    29   2.3  
03_01_0233 + 1833473-1833814,1833910-1834045,1834820-1834953,183...    27   6.9  

>01_06_0133 -
           26793335-26793380,26793696-26793907,26794009-26794134,
           26794258-26794335,26794857-26795014,26795230-26795278,
           26795369-26795414,26795527-26795654,26796154-26796237,
           26796317-26796409,26796505-26796549,26796792-26796851
          Length = 374

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 273 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVNFIKTTSVPERL 413
           E+ ++SR + +  T+E   +V  L AEN  L  +++ +  +S   RL
Sbjct: 237 ESARRSRLRKQAETEELARKVELLTAENTSLRREISRLTESSKKLRL 283


>03_01_0233 +
           1833473-1833814,1833910-1834045,1834820-1834953,
           1835379-1835484,1836339-1836424,1836816-1837004,
           1837131-1837322,1837407-1837520,1837614-1837910
          Length = 531

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 351 ENQVLEEKVNFIKTTSVPERLVFCSSKER--HHRIGRYRL 464
           ENQ +E  +       + E L +CSS ER  +H +  YR+
Sbjct: 161 ENQTIEWAMRLRVAHHIAEALDYCSSNERPLYHDLNAYRV 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,085,358
Number of Sequences: 37544
Number of extensions: 154302
Number of successful extensions: 344
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)