Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305C04f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19986| Best HMM Match : bZIP_2 (HMM E-Value=5.7e-17)                42   4e-04
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.44 
SB_30472| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_46279| Best HMM Match : PBS_linker_poly (HMM E-Value=5.4)           27   7.1  
SB_20432| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_19362| Best HMM Match : M (HMM E-Value=0.0014)                      27   7.1  
SB_57265| Best HMM Match : HTH_8 (HMM E-Value=1.2)                     27   9.4  

>SB_19986| Best HMM Match : bZIP_2 (HMM E-Value=5.7e-17)
          Length = 278

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 20/37 (54%), Positives = 27/37 (72%)
 Frame = +3

Query: 276 AVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVNFI 386
           AV+KSRFKSKQ+  ET SRV +L  EN+ L  +++ I
Sbjct: 209 AVRKSRFKSKQKFIETQSRVEELTEENERLHSRIDII 245


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 303  KQRTQETFSRVSKLKAENQVLEEKVNFIKTTS 398
            K+  QE    VSKL+ EN VLEEKV  +   S
Sbjct: 2891 KRNIQELQRNVSKLEEENAVLEEKVKLLDEAS 2922


>SB_30472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 282 KKSRFKSKQRTQETFSR-VSKLKAENQVLEEKVNFIKTTSVPERLVFCSS 428
           +K+  ++K++ +E   R   K KAE    E +    K  SVPE LV C+S
Sbjct: 319 EKAETEAKKQEEEERKRDEEKKKAERAAAEARKKKEKAKSVPEYLVDCTS 368


>SB_46279| Best HMM Match : PBS_linker_poly (HMM E-Value=5.4)
          Length = 360

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 352 RTKCSRRK*TLSKQLQFLKDLFFAQAKKDTTELE 453
           R  CSR   TL ++  FL+D++FA   K  TEL+
Sbjct: 188 REMCSRDH-TLKQRPTFLRDVYFAGISKVFTELK 220


>SB_20432| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 384 IKTTSVP-ERLVFCSSKERHHRIGRYRLKQAL*R 482
           +K T VP E +VFC   +R++ +G Y  KQ   R
Sbjct: 34  LKPTLVPSEAIVFCRVCQRNNELGTYSNKQTFWR 67


>SB_19362| Best HMM Match : M (HMM E-Value=0.0014)
          Length = 722

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/62 (22%), Positives = 28/62 (45%)
 Frame = +3

Query: 303 KQRTQETFSRVSKLKAENQVLEEKVNFIKTTSVPERLVFCSSKERHHRIGRYRLKQAL*R 482
           K +  +    +  +K +NQ +++ +  +K   V  R      K  H R+ R   ++ + R
Sbjct: 373 KDKLNDKEKHIDSVKKDNQGMDQAMEAMKKELVATRSEMQRLKREHERLQRENAEREIDR 432

Query: 483 LT 488
           LT
Sbjct: 433 LT 434


>SB_57265| Best HMM Match : HTH_8 (HMM E-Value=1.2)
          Length = 274

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 291 RFKSKQRTQETFSRVSKLKAENQVLEEK 374
           R ++++R +E  S + +L+ EN+VLE +
Sbjct: 137 RQEARERNEERLSEIDELERENRVLENQ 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,047,148
Number of Sequences: 59808
Number of extensions: 190572
Number of successful extensions: 661
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)