Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305C04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000262-5|AAN60522.1|  100|Caenorhabditis elegans Hypothetical ...    36   0.013
U12965-1|AAA20611.1|  176|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81557-7|CAB04538.1|  421|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U88167-2|AAB42225.3|  908|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AC006835-1|AAF40015.2|  903|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical p...    27   6.2  
U56963-1|AAB38120.1|  161|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U51997-6|AAG24064.1|  159|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL132952-4|CAB61136.1|  185|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AF000262-5|AAN60522.1|  100|Caenorhabditis elegans Hypothetical
           protein C48E7.11 protein.
          Length = 100

 Score = 36.3 bits (80), Expect = 0.013
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +3

Query: 273 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKV 377
           EAV ++R K +Q   +T  +V +LK EN+ LE KV
Sbjct: 29  EAVNRTRQKKRQEENDTAEKVDELKKENETLERKV 63


>U12965-1|AAA20611.1|  176|Caenorhabditis elegans Hypothetical
           protein F23F12.9a protein.
          Length = 176

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 273 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVNFIK 389
           EA KKSR   K R Q+  +    LK +N  LEE++   K
Sbjct: 77  EAAKKSRASRKHREQKNQTENELLKRKNAALEEELKQAK 115


>Z81557-7|CAB04538.1|  421|Caenorhabditis elegans Hypothetical
           protein F59A1.13 protein.
          Length = 421

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 169 KTIFTICLLLKEGSVVLAMLMMRM 240
           K  F++C ++ +GSVV+ +L+M M
Sbjct: 286 KMRFSVCTIVSQGSVVIGLLLMAM 309


>U88167-2|AAB42225.3|  908|Caenorhabditis elegans Hypothetical
           protein D2092.5 protein.
          Length = 908

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +3

Query: 285 KSRFKSKQRTQETFS-RVSKLKAENQVLEEKVNFIKTTSVPERLVFCSSKERHHRIGRYR 461
           +S   S++  +E F  +VS  ++    L ++++ ++   V +  + CSS ERH    +++
Sbjct: 534 RSEISSRRSQEEDFKLQVSMHESNETRLSQQLSNMRL-KVEQMEIKCSSIERHRESDKHQ 592

Query: 462 LKQA 473
           L+QA
Sbjct: 593 LEQA 596


>AC006835-1|AAF40015.2|  903|Caenorhabditis elegans Hypothetical
           protein ZK993.2 protein.
          Length = 903

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +3

Query: 273 EAVKKSRFKSKQRTQETFSRVSKLKAE 353
           E +KKS  +SK+  ++  SRV KLKAE
Sbjct: 682 EQLKKSYEESKKPRRDLISRVRKLKAE 708


>Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical
           protein F22D6.3a protein.
          Length = 545

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +3

Query: 273 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEE--KVNFIKTTSVPERLVFCSSKERHHR 446
           +AVKK   + K+  +         +A++  LEE  K+ F    S+PE  V    +   HR
Sbjct: 61  KAVKKYEAEVKKLEKAGCREKEAEEAQHAALEEAKKITFSLDKSLPEAKVIKIGESVQHR 120

Query: 447 IGRYRLKQAL*RLTRR 494
             R  +K  + RL R+
Sbjct: 121 DQRVSIKAWVHRLRRQ 136


>U56963-1|AAB38120.1|  161|Caenorhabditis elegans Hypothetical
           protein T13A10.2 protein.
          Length = 161

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 273 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVNFIKTTS 398
           E ++K +  +++R  E    V+KL+AEN  L   ++ +KT +
Sbjct: 31  EVMEKEQVAAEKRLVECREDVAKLRAENAQLATDIDNLKTAT 72


>U51997-6|AAG24064.1|  159|Caenorhabditis elegans Hypothetical
           protein F19G12.1 protein.
          Length = 159

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 273 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVNFIKTTS 398
           E ++K +  +++R  E    V+KL+AEN  L   ++ +KT +
Sbjct: 31  EVMEKEQVAAEKRLVECREDVAKLRAENAQLATDIDNLKTAT 72


>AL132952-4|CAB61136.1|  185|Caenorhabditis elegans Hypothetical
           protein Y51H4A.4 protein.
          Length = 185

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 273 EAVKKSRFKSKQRTQETFSRVSKLKAENQVL 365
           EA +KSR   K+  Q+   RV+ L+ ENQ L
Sbjct: 115 EAARKSRESRKKVDQDNSVRVTYLERENQCL 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,275,269
Number of Sequences: 27780
Number of extensions: 153453
Number of successful extensions: 512
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)