Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305C04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   5.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   5.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   5.8  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 144 PDSFLMLLEDNFYDMPPVKRGKRGV 218
           P   L L++ N+Y  PP+     G+
Sbjct: 30  PPDMLHLIDANWYQYPPLNPMWHGI 54


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 273 EAVKKSRFKSKQRTQETFSRVSKLKAE 353
           EAV++ R ++K+R Q      S L ++
Sbjct: 178 EAVQEERQRTKERDQSEVESTSSLHSD 204


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 273 EAVKKSRFKSKQRTQETFSRVSKLKAE 353
           EAV++ R ++K+R Q      S L ++
Sbjct: 178 EAVQEERQRTKERDQSEVESTSSLHSD 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,132
Number of Sequences: 438
Number of extensions: 1976
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)