Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305C04f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17710.1 68417.m02645 homeobox-leucine zipper family protein ...    32   0.27 
At2g46270.2 68415.m05754 G-box binding factor 3 (GBF3) identical...    30   0.82 
At2g46270.1 68415.m05753 G-box binding factor 3 (GBF3) identical...    30   0.82 
At5g15830.1 68418.m01852 bZIP transcription factor family protei...    30   1.1  
At1g48800.1 68414.m05461 terpene synthase/cyclase family protein...    27   7.7  

>At4g17710.1 68417.m02645 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           HD-Zip homeo domain OCL4 protein (GI:8920425) [Zea
           mays]; contains Pfam PF00046: Homeobox domain and Pfam
           PF01852: START domain
          Length = 709

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 20/63 (31%), Positives = 38/63 (60%)
 Frame = +3

Query: 297 KSKQRTQETFSRVSKLKAENQVLEEKVNFIKTTSVPERLVFCSSKERHHRIGRYRLKQAL 476
           +++ + Q++ S  +KLKAEN+ L+ +   I++     + +FCS+   + R+   RL+Q L
Sbjct: 140 RTQIKAQQSRSDNAKLKAENETLKTESQNIQSNF---QCLFCSTCGHNLRLENARLRQEL 196

Query: 477 *RL 485
            RL
Sbjct: 197 DRL 199


>At2g46270.2 68415.m05754 G-box binding factor 3 (GBF3) identical to
           G-box binding factor 3 (GBF3) SP:P42776 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00170
           bZIP transcription factor
          Length = 359

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 273 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVNFIKTTS 398
           E+ ++SR + +  T+E   +V  L AEN  L  ++N +   S
Sbjct: 248 ESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKS 289


>At2g46270.1 68415.m05753 G-box binding factor 3 (GBF3) identical to
           G-box binding factor 3 (GBF3) SP:P42776 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00170
           bZIP transcription factor
          Length = 382

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 273 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVNFIKTTS 398
           E+ ++SR + +  T+E   +V  L AEN  L  ++N +   S
Sbjct: 271 ESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKS 312


>At5g15830.1 68418.m01852 bZIP transcription factor family protein
           similar to common plant regulatory factor 7 GI:9650828
           from [Petroselinum crispum]; contains Pfam profile:
           PF00170 bZIP transcription factor
          Length = 186

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +3

Query: 273 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVN 380
           E+ ++SR + ++   E  S+V+ L++EN  L +K+N
Sbjct: 84  ESARRSRMRKQRHLDELLSQVAWLRSENHQLLDKLN 119


>At1g48800.1 68414.m05461 terpene synthase/cyclase family protein
           similar to terpene cyclase GI:9293912 from [Arabidopsis
           thaliana]
          Length = 603

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -3

Query: 360 LGSRLSIY*HVRMFPAC 310
           LGSRLSI  H   FPAC
Sbjct: 11  LGSRLSIRSHTTAFPAC 27


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,589,476
Number of Sequences: 28952
Number of extensions: 136635
Number of successful extensions: 286
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)