Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305C02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1142 - 34391144-34391590,34391715-34391904,34392058-343921...    29   3.0  
04_04_0036 - 22307328-22308026                                         28   4.0  
07_03_1669 + 28499143-28499409,28499915-28500055,28500528-285006...    28   5.2  
02_02_0679 - 12875988-12876016,12876186-12876306,12877792-12877974     28   5.2  
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967...    28   5.2  

>02_05_1142 -
           34391144-34391590,34391715-34391904,34392058-34392128,
           34392403-34392515,34392656-34392749,34392843-34392908,
           34393120-34393282,34393441-34393547,34393918-34394115,
           34394204-34394329,34394800-34394904,34395056-34395098,
           34395334-34395391,34395479-34395659,34395751-34395917,
           34396010-34396249,34396341-34396781,34397147-34397272,
           34397457-34397561,34397935-34398002,34398169-34398272,
           34398856-34399008,34399472-34399570,34399919-34400046,
           34400149-34400300,34400423-34400502
          Length = 1274

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -1

Query: 257 PQIVARFFISRPHLNLFR 204
           P+I++R+F SRPH+  FR
Sbjct: 601 PEILSRYFTSRPHILAFR 618


>04_04_0036 - 22307328-22308026
          Length = 232

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 395 GVGARGRNRSLGACCCTKSSVNGSPFFICSKAESCI 288
           G GAR RN    A CC  S ++ S    CS  E  +
Sbjct: 36  GAGARQRNGRCRALCCGASRLSVSSSASCSSVEYAV 71


>07_03_1669 +
           28499143-28499409,28499915-28500055,28500528-28500659,
           28501185-28501373,28501503-28501580,28502267-28502386,
           28502701-28502818,28503012-28503280,28503428-28503622,
           28503737-28503879,28504096-28504180,28504270-28504479,
           28504559-28504711,28504862-28504966,28505044-28505235
          Length = 798

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 356 CCCTKSSVNGSPFFICSKAESCI 288
           C CT +SV G+PF+I    E  I
Sbjct: 107 CLCTDASVIGTPFYIMEHLEGLI 129


>02_02_0679 - 12875988-12876016,12876186-12876306,12877792-12877974
          Length = 110

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 125 PCSYPRKCGELP*MNDGRKF*QHSLRLEKDSNVVER*KNALQSGVSVYV 271
           P + P +   LP  +DG+   + SLR   +SN+     N L  G++VY+
Sbjct: 40  PFTLPARTSPLPPPSDGQ-LKKESLRFGTESNISISYYNLLLHGITVYI 87


>01_03_0284 -
           14595643-14595663,14595978-14596018,14596379-14596732,
           14597023-14597494,14597524-14600001
          Length = 1121

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 328 PLTDDLVQQHAPRLRFLPRAP 390
           PL +D+  ++ P+L FLP+AP
Sbjct: 850 PLLEDIHVKNCPKLTFLPKAP 870


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,239,953
Number of Sequences: 37544
Number of extensions: 240910
Number of successful extensions: 542
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)