Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305C02f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27574| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_10764| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_47384| Best HMM Match : Pox_A32 (HMM E-Value=0.029)                 27   9.4  

>SB_27574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/62 (35%), Positives = 32/62 (51%)
 Frame = +1

Query: 64  APNYFDLDNVIMPYIMDNWHALQLPEKMWRTPVNERREKILTALTSSRKRFKCGREMKKR 243
           AP+ F L  VI P++ D W   + PE + R     R+E  +  L S     K  RE+K++
Sbjct: 534 APSPFLLGGVIEPHL-DTWEEKE-PEVVSRI----RKELYVDDLISGASTVKEARELKEK 587

Query: 244 AT 249
           AT
Sbjct: 588 AT 589


>SB_10764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +3

Query: 108 YGQLARPAVTRENVANSRK*TTGENSNSTHFVSKKIQMWSRDE 236
           +GQ A+P  T +N+ N R+   G+ + ++H    + + WS D+
Sbjct: 237 HGQ-AKPVWTDKNLVNHRERGLGQGTVTSHCAESQRRKWSPDD 278


>SB_47384| Best HMM Match : Pox_A32 (HMM E-Value=0.029)
          Length = 327

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +1

Query: 118 WHALQLPEKMWRTPVNERREKILTALTSSRKRFKCGREM 234
           W+A + P ++ +T + + REK+   + S + R   G+ +
Sbjct: 212 WNARRKPSRLPQTEIADAREKLAILVASGKSREMVGKAL 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,423,158
Number of Sequences: 59808
Number of extensions: 282377
Number of successful extensions: 810
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)