Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305C02f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L35153-1|AAA64457.1|  857|Drosophila melanogaster polycomblike n...    64   1e-10
AY075585-1|AAL68389.1| 1043|Drosophila melanogaster SD09488p pro...    64   1e-10
AE013599-2620|AAF57748.2| 1043|Drosophila melanogaster CG5109-PA...    64   1e-10
U62547-1|AAC47658.1| 1145|Drosophila melanogaster mitochondrial ...    29   3.8  
U60298-1|AAC47290.1| 1145|Drosophila melanogaster DNA polymerase...    29   3.8  
AY089226-1|AAL89964.1| 1145|Drosophila melanogaster AT02241p pro...    29   3.8  
AE014134-2406|AAF53338.1| 1145|Drosophila melanogaster CG8987-PA...    29   3.8  

>L35153-1|AAA64457.1|  857|Drosophila melanogaster polycomblike
           nuclear protein protein.
          Length = 857

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
 Frame = +1

Query: 1   RLELCWLDLAHLALYNLTAYNAPNYFDLDNVIMPYIMDNWHALQLPEKMWRT-PVNERRE 177
           R+++ W+D+ H+ALYNL  +    Y  L N I P+I++  H L + EK WRT P     E
Sbjct: 572 RMQIEWVDVLHIALYNLRKHQHQKYHHLLNDIWPFILEQRHQLPICEK-WRTLPETALME 630

Query: 178 KILTALTSSRKRFKCGREMKK 240
           ++   L     RF CGRE K+
Sbjct: 631 RLKQTLKDYSDRFVCGREFKR 651


>AY075585-1|AAL68389.1| 1043|Drosophila melanogaster SD09488p
           protein.
          Length = 1043

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
 Frame = +1

Query: 1   RLELCWLDLAHLALYNLTAYNAPNYFDLDNVIMPYIMDNWHALQLPEKMWRT-PVNERRE 177
           R+++ W+D+ H+ALYNL  +    Y  L N I P+I++  H L + EK WRT P     E
Sbjct: 572 RMQIEWVDVLHIALYNLRKHQHQKYHHLLNDIWPFILEQRHQLPICEK-WRTLPETALME 630

Query: 178 KILTALTSSRKRFKCGREMKK 240
           ++   L     RF CGRE K+
Sbjct: 631 RLKQTLKDYSDRFVCGREFKR 651


>AE013599-2620|AAF57748.2| 1043|Drosophila melanogaster CG5109-PA
           protein.
          Length = 1043

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
 Frame = +1

Query: 1   RLELCWLDLAHLALYNLTAYNAPNYFDLDNVIMPYIMDNWHALQLPEKMWRT-PVNERRE 177
           R+++ W+D+ H+ALYNL  +    Y  L N I P+I++  H L + EK WRT P     E
Sbjct: 572 RMQIEWVDVLHIALYNLRKHQHQKYHHLLNDIWPFILEQRHQLPICEK-WRTLPETALME 630

Query: 178 KILTALTSSRKRFKCGREMKK 240
           ++   L     RF CGRE K+
Sbjct: 631 RLKQTLKDYSDRFVCGREFKR 651


>U62547-1|AAC47658.1| 1145|Drosophila melanogaster mitochondrial DNA
           polymerase catalyticsubunit precursor protein.
          Length = 1145

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 344 WCNNTLPDSGFYLVLLHRNLLLMTVLSPLA 433
           WCN  L D  F+L L H+N     V +PL+
Sbjct: 657 WCNKVLDDCCFFLKLPHKNGPSFRVGNPLS 686


>U60298-1|AAC47290.1| 1145|Drosophila melanogaster DNA polymerase
           gamma protein.
          Length = 1145

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 344 WCNNTLPDSGFYLVLLHRNLLLMTVLSPLA 433
           WCN  L D  F+L L H+N     V +PL+
Sbjct: 657 WCNKVLDDCCFFLKLPHKNGPSFRVGNPLS 686


>AY089226-1|AAL89964.1| 1145|Drosophila melanogaster AT02241p
           protein.
          Length = 1145

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 344 WCNNTLPDSGFYLVLLHRNLLLMTVLSPLA 433
           WCN  L D  F+L L H+N     V +PL+
Sbjct: 657 WCNKVLDDCCFFLKLPHKNGPSFRVGNPLS 686


>AE014134-2406|AAF53338.1| 1145|Drosophila melanogaster CG8987-PA
           protein.
          Length = 1145

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 344 WCNNTLPDSGFYLVLLHRNLLLMTVLSPLA 433
           WCN  L D  F+L L H+N     V +PL+
Sbjct: 657 WCNKVLDDCCFFLKLPHKNGPSFRVGNPLS 686


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,344,592
Number of Sequences: 53049
Number of extensions: 413710
Number of successful extensions: 959
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)