Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305C02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016441-3|AAB65909.2|  744|Caenorhabditis elegans Hypothetical ...    25   0.85 
Z46240-3|CAA86312.1|  309|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote...    28   3.5  

>AF016441-3|AAB65909.2|  744|Caenorhabditis elegans Hypothetical
           protein M03F8.3 protein.
          Length = 744

 Score = 25.0 bits (52), Expect(2) = 0.85
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 106 IMDNWHALQLPEKMWRTPVN-ERREKILTALTSSRKRF 216
           I + W   + PE+ W+T +N E R K +    S  +RF
Sbjct: 176 IFERWIEWEPPEQAWQTYINFELRYKEIDRARSVYQRF 213



 Score = 23.8 bits (49), Expect(2) = 0.85
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 16  WLDLAHLALYNLTAYNAPNYFDLDNVIMPYIMDNW 120
           WL  A + +      +A N FD    IMP  M  W
Sbjct: 123 WLQYAEMEMRCKQINHARNVFDRAITIMPRAMQFW 157


>Z46240-3|CAA86312.1|  309|Caenorhabditis elegans Hypothetical
           protein B0272.3 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 43  YNLTAYNAPNYFDLDNVIMPYIMDNWHALQLPEKMWRTP 159
           Y +  +   +Y  LD     +IMD WHA Q PE++  TP
Sbjct: 249 YPMGPFELSDYVGLDTC--KFIMDGWHA-QYPEEVAFTP 284


>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
           1, isoform d protein.
          Length = 1106

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 389 GARGRNRSLGACCCTKSSVNGSP 321
           G+R ++R L  CCCT  +   SP
Sbjct: 53  GSRSKSRKLKLCCCTAQAATLSP 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,325,342
Number of Sequences: 27780
Number of extensions: 212659
Number of successful extensions: 458
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)