Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305C02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    26   0.20 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.4  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              23   2.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   5.8  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 160 VNERREKILTALTSSRKRFKCGREMKKRA 246
           ++  +EK+L   TS RKR+ C RE ++++
Sbjct: 255 LHNEKEKLLEERTS-RKRYSCSREREQKS 282


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 321 GRTIDRRLGATTRSQTPVSTSCSYTE 398
           GR + RR+ AT    T   TS  Y E
Sbjct: 461 GRALSRRIKATVLFATETGTSQMYAE 486


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 160 VNERREKILTALTSSRKRFKCGREMKKRATIW 255
           + +R +K +TAL  S  + K     +K+ ++W
Sbjct: 84  IADRMQKEITALAPSTMKIKIIAPPEKKYSVW 115


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 472 VDGYFYRNILQDYC 431
           +  Y +R+ L+DYC
Sbjct: 349 ISRYVFRSALEDYC 362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,823
Number of Sequences: 438
Number of extensions: 2428
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)