Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305C01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0254 - 1893079-1893181,1893455-1893492,1893586-1893706,189... 155 3e-38
02_01_0273 + 1822370-1822503,1822913-1823258,1823393-1823635,182... 45 3e-05
12_01_0647 - 5485100-5487028 28 5.2
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 28 5.2
11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,557... 28 5.2
03_02_0503 + 8951824-8952642,8953159-8953770,8953938-8954042 28 5.2
04_03_0925 - 20856628-20856690,20856786-20856845,20856924-208570... 27 6.9
11_01_0654 + 5290722-5290736,5291176-5291875,5292335-5292450 27 9.1
>07_01_0254 -
1893079-1893181,1893455-1893492,1893586-1893706,
1893800-1893869,1894231-1894401,1894485-1894659,
1894746-1894933,1895023-1895166,1895316-1895379,
1895464-1895556,1895649-1895734,1896434-1896574,
1896658-1896804,1896970-1897057,1898080-1898235,
1898428-1898577
Length = 644
Score = 155 bits (375), Expect = 3e-38
Identities = 77/142 (54%), Positives = 89/142 (62%)
Frame = +1
Query: 67 KAAVSRSPASLASYLYRNIHVAASGATSKDASVTTNMTKAYTVIDHKHDXXXXXXXXXXX 246
K + S +P S A+ L+ AS S T +YTV+DH +D
Sbjct: 17 KGSSSSAPVSAAARLFST----ASVVPSIPRPQLIRATSSYTVVDHSYDAVVVGAGGAGL 72
Query: 247 XXXXXXVQEGFKTAVVTKLFPTRSHTVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLG 426
+ GF TA +TKLFPTRSHTVAAQGGINAALGNM ED W WHMYDTVKGSDWLG
Sbjct: 73 RAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLG 132
Query: 427 DQDAIHYMTKEAPHAVIELDNY 492
DQD+I YM +EAP AVIEL+NY
Sbjct: 133 DQDSIQYMCREAPKAVIELENY 154
>02_01_0273 +
1822370-1822503,1822913-1823258,1823393-1823635,
1824212-1824268,1824407-1824487,1824725-1824786,
1824990-1826004
Length = 645
Score = 45.2 bits (102), Expect = 3e-05
Identities = 25/66 (37%), Positives = 36/66 (54%)
Frame = +1
Query: 286 AVVTKLFPTRSHTVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAP 465
A++TK P S+T AQGG++A L DS HM DT+ +L D++ + + E P
Sbjct: 110 AIITKAEPHESNTNYAQGGVSAVL--CPSDSVESHMQDTIVAGAYLCDEETVRVVCTEGP 167
Query: 466 HAVIEL 483
V EL
Sbjct: 168 ERVKEL 173
>12_01_0647 - 5485100-5487028
Length = 642
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 328 AAQGGINAALGNMEEDSWLWHMYDTVKG-SDWLGDQDAIHYMTKEAPHAVIELDNY 492
A Q G +LG++ D WLW++ D ++ D + + + K V EL +Y
Sbjct: 60 ANQSGETRSLGDL--DVWLWNLRDAIEELEDAIDEHEYYKLREKAKEQEVCELGSY 113
>11_06_0395 +
23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 373 DSWLWHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELD 486
D WLW D V+G++ + D+ + + +EA +EL+
Sbjct: 369 DKWLWQFRDAVEGAEDVLDEIDYYKLEEEAGVHNLELE 406
>11_01_0682 -
5575297-5575308,5575391-5575516,5575779-5575885,
5575911-5576013,5576122-5576187,5576378-5576461,
5577448-5577522,5577615-5577668,5577752-5577895,
5578632-5578685,5578877-5578981,5579076-5579173,
5579660-5579729,5580444-5580566,5580647-5580727,
5580996-5581476,5581684-5581816,5582550-5582598,
5582704-5582892,5583642-5583703,5583762-5585316
Length = 1256
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = +1
Query: 313 RSHTVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELDNY 492
R TVA GG +AA + WL +D+ +W+ A+ Y+ K V +
Sbjct: 19 REITVAGGGGGDAAAHPVGSSGWLVRFFDSAFFCEWI----AVSYLYKHDHQGVRDYLCN 74
Query: 493 XNAILPHPG 519
LP PG
Sbjct: 75 RMYTLPLPG 83
>03_02_0503 + 8951824-8952642,8953159-8953770,8953938-8954042
Length = 511
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/59 (25%), Positives = 24/59 (40%)
Frame = +1
Query: 310 TRSHTVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELD 486
T +H V G NA + LW ++G WL D+ + + P+ V+ D
Sbjct: 74 TLAHIVFVIGASNATWAKRRVYTGLWWRPGAMRGHVWLDDEPSGQWRPSWPPYRVLRPD 132
>04_03_0925 -
20856628-20856690,20856786-20856845,20856924-20857001,
20857127-20857192,20857542-20858675,20858991-20860283
Length = 897
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 34 RTESSIMSTLMKAAVSRSPASLASYLYRNIHVAASGATSKDASVTTNMTKA 186
RT + +T +VSR PA+ A+ + I + A+ AT+ A+ +T A
Sbjct: 128 RTATRATTTTTATSVSRRPAAAAAAVASRIPLRATDATTTHAASRNPLTGA 178
>11_01_0654 + 5290722-5290736,5291176-5291875,5292335-5292450
Length = 276
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 392 ICQSQLSSSILPKAALIPPCAATVCDLVGNN 300
I S + I P A + C TVCD+V N
Sbjct: 17 ILTSDIEEVIKPNFAQLQECGLTVCDIVKTN 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,077,065
Number of Sequences: 37544
Number of extensions: 262985
Number of successful extensions: 685
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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