Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305C01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19704| Best HMM Match : FAD_binding_2 (HMM E-Value=0.48)           103   1e-22
SB_18943| Best HMM Match : DUF753 (HMM E-Value=5.9)                    30   1.0  
SB_4655| Best HMM Match : Spectrin (HMM E-Value=0)                     30   1.3  
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)                    28   5.4  
SB_14560| Best HMM Match : Sushi (HMM E-Value=3.6e-35)                 28   5.4  
SB_21875| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_6730| Best HMM Match : 7tm_1 (HMM E-Value=6.50006e-41)              27   9.4  
SB_43261| Best HMM Match : TSP_1 (HMM E-Value=0.0026)                  27   9.4  

>SB_19704| Best HMM Match : FAD_binding_2 (HMM E-Value=0.48)
          Length = 190

 Score =  103 bits (246), Expect = 1e-22
 Identities = 45/57 (78%), Positives = 47/57 (82%)
 Frame = +1

Query: 322 TVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELDNY 492
           T   +GGINAALGNME D W WHMYDTVKGSDWLGDQDAIHYMT+EAP AVIE   Y
Sbjct: 46  TSKTEGGINAALGNMEPDDWRWHMYDTVKGSDWLGDQDAIHYMTEEAPKAVIESLRY 102


>SB_18943| Best HMM Match : DUF753 (HMM E-Value=5.9)
          Length = 676

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = +1

Query: 385 WHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELDNYXNAILPHP 516
           WH   T   + W G +    Y T+    A  E  N  +  LP P
Sbjct: 450 WHKSKTWNFTSWFGGERFEVYQTERISRATFEFSNQCHCFLPSP 493


>SB_4655| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 934

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 367 EEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELDNYXNAI 504
           E DSWL      V  SD+  D+D+   M K+    + +L+ Y   I
Sbjct: 783 EADSWLMEKEPVVTSSDYGKDEDSAQAMLKKHEAIMSDLEAYSTVI 828


>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1448

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -2

Query: 382 ANCLP-PYCPKQH*FHPVQQQYV 317
           AN LP PY P+   FHP+  QY+
Sbjct: 401 ANSLPFPYAPRYPAFHPIAHQYI 423


>SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1021

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +1

Query: 46  SIMSTLMKAAVSRSPASLASYLYRNIHVAASGATSKDASVTTNMTKAYTVIDHKHD 213
           +I   L++   +  P  +   +    +VA      +D+S+T N     T++ HKHD
Sbjct: 344 TIQVKLLQVPNAARPGLVPEDITTGSNVAIVEVRDRDSSLTVNSVVDVTLLHHKHD 399


>SB_14560| Best HMM Match : Sushi (HMM E-Value=3.6e-35)
          Length = 716

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 10  IKNTVLWVRTESSIMSTLMKAAVSRSPASLASYLYRNIHVAASGATSKDASVTTN 174
           +KNT+  ++ +S +    M AA S  PAS    +Y N       A  +D + T N
Sbjct: 342 VKNTICTLKNDSDLKLPQMIAAFSNYPASAVQDVYDN---CPPKAKRRDKTTTKN 393


>SB_21875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 396

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 353 AALIPPCAATVCDLVGNNLVTTAVL-NPS 270
           A  + PC   V  L+GN LV  AV+ NP+
Sbjct: 36  AEAVVPCVLAVVSLIGNLLVVLAVIRNPA 64


>SB_6730| Best HMM Match : 7tm_1 (HMM E-Value=6.50006e-41)
          Length = 396

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 353 AALIPPCAATVCDLVGNNLVTTAVL-NPS 270
           A  + PC   V  L+GN LV  AV+ NP+
Sbjct: 36  AEAVVPCVLAVVSLIGNLLVVLAVIRNPA 64


>SB_43261| Best HMM Match : TSP_1 (HMM E-Value=0.0026)
          Length = 649

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -1

Query: 419 QSEPLTVSYICQSQLSSSILPKAAL-IPPCAATVCDLVGNNLVTTAVLNP 273
           +SE  T    C      S+L KAA    PCA  V +L G+ L      NP
Sbjct: 464 ESELATDDASCSDGTRKSVLKKAACNTDPCAVAVAEL-GHELAHAPTRNP 512


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,890,500
Number of Sequences: 59808
Number of extensions: 295237
Number of successful extensions: 737
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)