Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305C01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D30651-1|BAA21637.1|  646|Caenorhabditis elegans flavoprotein su...   152   1e-37
U41555-9|AAB37034.1|  646|Caenorhabditis elegans Hypothetical pr...   149   9e-37
AF043693-6|AAB97539.1|  640|Caenorhabditis elegans Hypothetical ...   147   4e-36
AF039713-7|AAB96722.1|  203|Caenorhabditis elegans Hypothetical ...    33   0.12 
AC006733-1|AAF60487.1|  610|Caenorhabditis elegans Hypothetical ...    29   2.7  

>D30651-1|BAA21637.1|  646|Caenorhabditis elegans flavoprotein
           subunit of complex II protein.
          Length = 646

 Score =  152 bits (369), Expect = 1e-37
 Identities = 73/122 (59%), Positives = 82/122 (67%)
 Frame = +1

Query: 127 VAASGATSKDASVTTNMTKAYTVIDHKHDXXXXXXXXXXXXXXXXXVQEGFKTAVVTKLF 306
           V+ S A   DA  +      Y V+DH +D                  +EG KTAV+TKLF
Sbjct: 18  VSLSAANHSDAKRSD--IAQYKVVDHAYDAVVVGAGGAGLRAAMGLAEEGLKTAVITKLF 75

Query: 307 PTRSHTVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELD 486
           PTRSHTVAAQGGINAALGNM  D+W WH YDTVKGSDWLGDQDAIHYMT+EA  AVIEL+
Sbjct: 76  PTRSHTVAAQGGINAALGNMNPDNWRWHFYDTVKGSDWLGDQDAIHYMTREAERAVIELE 135

Query: 487 NY 492
           NY
Sbjct: 136 NY 137


>U41555-9|AAB37034.1|  646|Caenorhabditis elegans Hypothetical
           protein C03G5.1 protein.
          Length = 646

 Score =  149 bits (362), Expect = 9e-37
 Identities = 72/122 (59%), Positives = 81/122 (66%)
 Frame = +1

Query: 127 VAASGATSKDASVTTNMTKAYTVIDHKHDXXXXXXXXXXXXXXXXXVQEGFKTAVVTKLF 306
           V+ S A   DA  +      Y V+DH +D                  + G KTAV+TKLF
Sbjct: 18  VSLSAANHSDAKRSD--IAQYKVVDHAYDAVVVGAGGAGLRAAMGLAEGGLKTAVITKLF 75

Query: 307 PTRSHTVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELD 486
           PTRSHTVAAQGGINAALGNM  D+W WH YDTVKGSDWLGDQDAIHYMT+EA  AVIEL+
Sbjct: 76  PTRSHTVAAQGGINAALGNMNPDNWRWHFYDTVKGSDWLGDQDAIHYMTREAERAVIELE 135

Query: 487 NY 492
           NY
Sbjct: 136 NY 137


>AF043693-6|AAB97539.1|  640|Caenorhabditis elegans Hypothetical
           protein C34B2.7 protein.
          Length = 640

 Score =  147 bits (357), Expect = 4e-36
 Identities = 69/114 (60%), Positives = 78/114 (68%)
 Frame = +1

Query: 151 KDASVTTNMTKAYTVIDHKHDXXXXXXXXXXXXXXXXXVQEGFKTAVVTKLFPTRSHTVA 330
           K  S TTN    + V+DH  D                  + G KTAV+TKLFPTRSHTVA
Sbjct: 21  KQVSATTN----FDVVDHTFDAVVVGAGGAGLRAAMGLSEGGMKTAVITKLFPTRSHTVA 76

Query: 331 AQGGINAALGNMEEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELDNY 492
           AQGG+NAALGNM  D+W WH YDTVKGSDWLGDQDAIHYMT+EA  A+IEL+NY
Sbjct: 77  AQGGVNAALGNMNPDNWRWHFYDTVKGSDWLGDQDAIHYMTREAERAIIELENY 130


>AF039713-7|AAB96722.1|  203|Caenorhabditis elegans Hypothetical
           protein F57B10.5 protein.
          Length = 203

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 415 DW-LGDQDAIHYMTKEAPHAVIELDNYXNAI 504
           DW  GDQ+A+H    +  HA+ +L+NY  AI
Sbjct: 108 DWQFGDQNALHAAVTQGAHAMTQLENYAVAI 138


>AC006733-1|AAF60487.1|  610|Caenorhabditis elegans Hypothetical
           protein Y32H12A.2 protein.
          Length = 610

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -1

Query: 185 ALVIFVVTEASLEVAPEAAT*IFLYKYDASDAGLRETAAFINV 57
           + +  + T  + +++  AAT  F YK +ASD   R+  A+I++
Sbjct: 508 SFIASIPTSLTKKISNSAATDRFSYKIEASDGNGRKLTAYISI 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,741,561
Number of Sequences: 27780
Number of extensions: 224185
Number of successful extensions: 497
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)